DC887829

Overview
NameDC887829
Unique NameDC887829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_CYPCA (60S ribosomal protein L15 OS=Cyprinus carpio GN=rpl15 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.825e-15
Identity = 42/63 (66.67%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R DP   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRDPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_ASPNG (60S ribosomal protein L15 OS=Aspergillus niger GN=rpl15 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.825e-15
Identity = 38/62 (61.29%), Postives = 42/62 (67.74%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            R D RINWIC  VHKHRE RGLT+ GKK RG+  KGH ++  R  RR TWKR  T S  RYR
Sbjct:  143 RRDARINWICNAVHKHREARGLTATGKKSRGI-NKGHRYNNTRSGRRHTWKRQNTQSYWRYR 203          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_ANOGA (60S ribosomal protein L15 OS=Anopheles gambiae GN=RpL15 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.996e-15
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATWKRNQTLSLRRYR 365
            R DP +NWIC  VHKHRELRGLTSAGK  RGL GKG+ + +    SRRA W+R   L LRRYR
Sbjct:  143 RRDPNVNWICNAVHKHRELRGLTSAGKSSRGL-GKGYRYSQTIGGSRRACWRRRNRLHLRRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_CHITE (60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 6.525e-15
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATWKRNQTLSLRRYR 365
            R DP++NW+C  VHKHRELRGLTSAGK  RG+ GKG+ + +    SRRA W+R   L LRRYR
Sbjct:  143 RRDPKVNWVCNAVHKHRELRGLTSAGKSSRGV-GKGYRYSQTIGGSRRAAWRRKNRLHLRRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_ANGJA (60S ribosomal protein L15 OS=Anguilla japonica GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.522e-15
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R DP   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:  143 RRDPDAQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_ICTPU (60S ribosomal protein L15 OS=Ictalurus punctatus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.113e-14
Identity = 41/63 (65.08%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL LRRYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAPWRRRNTLQLRRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_MYLPI (60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRDTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_MONAL (60S ribosomal protein L15 OS=Monopterus albus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_MEGAM (60S ribosomal protein L15 OS=Megalobrama amblycephala GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_HYPNO (60S ribosomal protein L15 OS=Hypophthalmichthys nobilis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
The following BLAST results are available for this feature:
BLAST of DC887829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL15_CYPCA3.825e-1566.6760S ribosomal protein L15 OS=Cyprinus carpio GN=rp... [more]
RL15_ASPNG3.825e-1561.2960S ribosomal protein L15 OS=Aspergillus niger GN=... [more]
RL15_ANOGA4.996e-1563.4960S ribosomal protein L15 OS=Anopheles gambiae GN=... [more]
RL15_CHITE6.525e-1560.3260S ribosomal protein L15 OS=Chironomus tentans GN... [more]
RL15_ANGJA8.522e-1565.0860S ribosomal protein L15 OS=Anguilla japonica GN=... [more]
RL15_ICTPU1.113e-1465.0860S ribosomal protein L15 OS=Ictalurus punctatus G... [more]
RL15_MYLPI1.454e-1465.0860S ribosomal protein L15 OS=Mylopharyngodon piceu... [more]
RL15_MONAL1.454e-1465.0860S ribosomal protein L15 OS=Monopterus albus GN=r... [more]
RL15_MEGAM1.454e-1465.0860S ribosomal protein L15 OS=Megalobrama amblyceph... [more]
RL15_HYPNO1.454e-1465.0860S ribosomal protein L15 OS=Hypophthalmichthys no... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887829 EIC Citrus sinensis cDNA clone EIC0962 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887829 ID=DC887829; Name=DC887829; organism=Citrus sinensis; type=EST; length=367bp
AAGGATTTATCGGATAAAACAATCCATAGGAATTACAAAATTCAATTGCC
CAAATGAAACAAAATTAACCATGTTGCAGCAAAAACTAACCCAAAACACT
TGTTTCGGAGTTCAAACTCAACAGCAATTAAACTAGGTTGATAATGTGAA
AAACACAAAGTAAACAATACAGAAGTTTAACGGTAACGCCTGAGAGAGAG
AGTTTGGTTCCTCTTCCAGGTTGCCCTTCTTGAAGGTCGTGCCTTGTGGT
GCAAGTGACCCTTTCCTCGGAGACCTCTGTACTTCTTCCCAGCAGAAGTG
AGTCCACGAAGCTCCCTGTGCTTGTGGACAGGCTTACAGATCCAGTTGAT
CCTGGGGTCATTGCGGA
back to top