DC887829

Overview
NameDC887829
Unique NameDC887829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_HYDAT (60S ribosomal protein L15 OS=Hydra attenuata GN=RPL15 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_EPICO (60S ribosomal protein L15 OS=Epinephelus coioides GN=rpl15 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_CTEID (60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_CARAU (60S ribosomal protein L15 OS=Carassius auratus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.454e-14
Identity = 41/63 (65.08%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_SILME (60S ribosomal protein L15 OS=Silurus meridionalis GN=rpl15 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14
Identity = 40/63 (63.49%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P + WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:  143 RRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_SILAS (60S ribosomal protein L15 OS=Silurus asotus GN=rpl15 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14
Identity = 40/63 (63.49%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P + WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:  143 RRNPDMQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_PELFU (60S ribosomal protein L15 OS=Pelteobagrus fulvidraco GN=rpl15 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.238e-14
Identity = 40/63 (63.49%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_PARDA (60S ribosomal protein L15 OS=Paramisgurnus dabryanus GN=rpl15 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.238e-14
Identity = 40/63 (63.49%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K VHKHRE+RGLTSAGKK RGL GKGH  H     SRRA W+R  TL L RYR
Sbjct:  143 RRNPDTQWITKAVHKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWRRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_HYPMO (60S ribosomal protein L15 OS=Hypophthalmichthys molitrix GN=rpl15 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.231e-13
Identity = 40/63 (63.49%), Postives = 42/63 (66.67%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 365
            R +P   WI K V KHRE+RGLTSAGKK RGL GKGH  H     SRRA WKR  TL L RYR
Sbjct:  143 RRNPDTQWITKAVRKHREMRGLTSAGKKSRGL-GKGHKFHLTIGGSRRAAWKRRNTLQLHRYR 204          
BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_DROME (60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.099e-13
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = -3
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKA-RPSRRATWKRNQTLSLRRYR 365
            R DP+INWICK VHKHRELRGLTSAGK  RG+ GKG+ + +    SRRA WKR     + R R
Sbjct:  143 RRDPKINWICKHVHKHRELRGLTSAGKSSRGI-GKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204          
The following BLAST results are available for this feature:
BLAST of DC887829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL15_HYDAT1.454e-1465.0860S ribosomal protein L15 OS=Hydra attenuata GN=RP... [more]
RL15_EPICO1.454e-1465.0860S ribosomal protein L15 OS=Epinephelus coioides ... [more]
RL15_CTEID1.454e-1465.0860S ribosomal protein L15 OS=Ctenopharyngodon idel... [more]
RL15_CARAU1.454e-1465.0860S ribosomal protein L15 OS=Carassius auratus GN=... [more]
RL15_SILME1.898e-1463.4960S ribosomal protein L15 OS=Silurus meridionalis ... [more]
RL15_SILAS1.898e-1463.4960S ribosomal protein L15 OS=Silurus asotus GN=rpl... [more]
RL15_PELFU3.238e-1463.4960S ribosomal protein L15 OS=Pelteobagrus fulvidra... [more]
RL15_PARDA3.238e-1463.4960S ribosomal protein L15 OS=Paramisgurnus dabryan... [more]
RL15_HYPMO1.231e-1363.4960S ribosomal protein L15 OS=Hypophthalmichthys mo... [more]
RL15_DROME2.099e-1360.3260S ribosomal protein L15 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionDC887829 EIC Citrus sinensis cDNA clone EIC0962 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887829 ID=DC887829; Name=DC887829; organism=Citrus sinensis; type=EST; length=367bp
AAGGATTTATCGGATAAAACAATCCATAGGAATTACAAAATTCAATTGCC
CAAATGAAACAAAATTAACCATGTTGCAGCAAAAACTAACCCAAAACACT
TGTTTCGGAGTTCAAACTCAACAGCAATTAAACTAGGTTGATAATGTGAA
AAACACAAAGTAAACAATACAGAAGTTTAACGGTAACGCCTGAGAGAGAG
AGTTTGGTTCCTCTTCCAGGTTGCCCTTCTTGAAGGTCGTGCCTTGTGGT
GCAAGTGACCCTTTCCTCGGAGACCTCTGTACTTCTTCCCAGCAGAAGTG
AGTCCACGAAGCTCCCTGTGCTTGTGGACAGGCTTACAGATCCAGTTGAT
CCTGGGGTCATTGCGGA
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