DC887829

Overview
NameDC887829
Unique NameDC887829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DC887829 vs. ExPASy Swiss-Prot
Match: RL15_ORCLI (60S ribosomal protein L15 OS=Orconectes limosus GN=RPL15 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.965e-11
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = -3 
Query:  180 RNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 365
            R    +NWICK   KHRE+RG TSAG+K+RGL    H       SRR+ W R+ TLSLRR R
Sbjct:  143 RKSGSLNWICKHTQKHREMRGKTSAGRKHRGLGRGFHYSQTKGGSRRSCWLRHNTLSLRRKR 204
The following BLAST results are available for this feature:
BLAST of DC887829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL15_ORCLI1.965e-1153.2360S ribosomal protein L15 OS=Orconectes limosus GN... [more]

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Properties
Property NameValue
Genbank descriptionDC887829 EIC Citrus sinensis cDNA clone EIC0962 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887829 ID=DC887829; Name=DC887829; organism=Citrus sinensis; type=EST; length=367bp
AAGGATTTATCGGATAAAACAATCCATAGGAATTACAAAATTCAATTGCC
CAAATGAAACAAAATTAACCATGTTGCAGCAAAAACTAACCCAAAACACT
TGTTTCGGAGTTCAAACTCAACAGCAATTAAACTAGGTTGATAATGTGAA
AAACACAAAGTAAACAATACAGAAGTTTAACGGTAACGCCTGAGAGAGAG
AGTTTGGTTCCTCTTCCAGGTTGCCCTTCTTGAAGGTCGTGCCTTGTGGT
GCAAGTGACCCTTTCCTCGGAGACCTCTGTACTTCTTCCCAGCAGAAGTG
AGTCCACGAAGCTCCCTGTGCTTGTGGACAGGCTTACAGATCCAGTTGAT
CCTGGGGTCATTGCGGA
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