CN185373

Overview
NameCN185373
Unique NameCN185373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.868e-35
Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 3
Query:   87 NSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            +SPCA+CK LRR+CT++C+FAPYFPPD P KFA VHKVFGASNV+K+L EL  +QR DAV+SL YEA AR+RDPVYGCVG IS LQ+++ Q+   L  A+ E+
Sbjct:    5 SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKEL 107          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD10_ARATH (LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 63/104 (60.58%), Postives = 84/104 (80.77%), Query Frame = 3
Query:   87 NSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            ++PCA+CKLLRR+CT++C+FAPYFPP +P KF  VH+VFGASNV+K+L +LP  QR D V+SL YEA AR+RDP+YGCVG ISFLQ  + ++Q  L  A+ E++
Sbjct:    3 STPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELV 106          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.125e-34
Identity = 67/103 (65.05%), Postives = 81/103 (78.64%), Query Frame = 3
Query:   90 SPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            +PCA+CKLLRRRC ++C F+PYF P +PHKFA VHKVFGASNVSKML E+   QR DA +SLVYEAN R+RDP+YGC+GAIS LQ+ +  LQ +L     EIL
Sbjct:   51 TPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEIL 153          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            G  SPCA+CK LRR+C  DC+FAPYFPPD+P KF  VH+VFGASNV+K+L EL  +QR DAV+SL YEA+ R+RDPVYGCV  IS LQ  + QLQ  LA A+ E+
Sbjct:   34 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFEL 138          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD6_ORYSI (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34
Identity = 67/105 (63.81%), Postives = 81/105 (77.14%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            G  SPCA+CK LRR+C  DC+FAPYFPPD+P KF  VH+VFGASNV+K+L EL  +QR DAV+SL YEA+ R+RDPVYGCV  IS LQ  + QLQ  LA A+ E+
Sbjct:   34 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFEL 138          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: IAL1_MAIZE (Protein IAL1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.586e-34
Identity = 65/105 (61.90%), Postives = 82/105 (78.10%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            G  SPCA+CK LRR+C  DC+FAPYFPPD+P KF  VH+VFGASNV+K++ E+   QR DA++SL YEA+ R+RDPVYGCVG IS LQ+ + QLQ  LA A+ E+
Sbjct:   29 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDAMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYEL 133          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:   96 CASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            CA+CK LRRRC KDC+F+PYFPP+DP KFA VH+++GA NVSKMLQ+LP   RA+AV SL +EA  RV DPVYGCVG I  L+ Q+ + Q +LA  +AEI
Sbjct:    6 CAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEI 105          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:   96 CASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            CA+CK LRRRC KDC+F+PYFPP+DP KFA VH+++GA NVSKMLQ+LP   RA+AV SL +EA  RV DPVYGCVG I  L+ Q+ + Q +LA  +AEI
Sbjct:    6 CAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQIQKTQNELAKTQAEI 105          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD21_ARATH (LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.893e-30
Identity = 63/104 (60.58%), Postives = 78/104 (75.00%), Query Frame = 3
Query:   87 NSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            +S CA+CKLL+RRCT  CIFAPYF   D   FA VHKVFGASNVSK+L E+P  QR + V+SL YEA  R++DPVYGC+GAI+ LQ ++ +LQ  LAVA   +L
Sbjct:    9 SSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEVPEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLL 112          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.428e-29
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDD-PHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEILCI 404
            GG  PC +CK LRR+C K C+FAPYF  +    +FA VHKVFGASN SKML  LP+H+R DAV +L YEA AR+RDPVYG VG +  LQ+QV  LQ +LA  +A +  I
Sbjct:   12 GGEGPCGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTI 120          
The following BLAST results are available for this feature:
BLAST of CN185373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LBD36_ARATH3.868e-3565.05LOB domain-containing protein 36 OS=Arabidopsis th... [more]
LBD10_ARATH8.617e-3560.58LOB domain-containing protein 10 OS=Arabidopsis th... [more]
LBD13_ARATH1.125e-3465.05LOB domain-containing protein 13 OS=Arabidopsis th... [more]
LBD6_ORYSJ3.275e-3463.81LOB domain-containing protein 6 OS=Oryza sativa su... [more]
LBD6_ORYSI3.275e-3463.81LOB domain-containing protein 6 OS=Oryza sativa su... [more]
IAL1_MAIZE5.586e-3461.90Protein IAL1 OS=Zea mays PE=2 SV=1[more]
LBD24_ARATH6.176e-3363.00LOB domain-containing protein 24 OS=Arabidopsis th... [more]
LBD23_ARATH6.176e-3363.00LOB domain-containing protein 23 OS=Arabidopsis th... [more]
LBD21_ARATH4.893e-3060.58LOB domain-containing protein 21 OS=Arabidopsis th... [more]
LBD19_ARATH2.428e-2957.80LOB domain-containing protein 19 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185373 ID=CN185373; Name=CN185373; organism=Citrus sinensis; type=EST; length=621bp
ATGCTCTGTTGTATCTCTATAGCCATCTTCTCCTTCCTCCAAGCACTTTT
TTTATTTTTCTTTTTTCACAGAGGAAAATGGGTGGAAATTCTCCATGTGC
CTCTTGCAAGTTGCTGCGTCGCCGTTGCACCAAAGACTGCATCTTTGCTC
CTTACTTCCCTCCTGATGATCCCCACAAGTTTGCCATTGTTCATAAGGTC
TTTGGTGCTAGCAACGTTAGCAAAATGTTGCAGGAGCTTCCGGTGCATCA
AAGGGCAGATGCAGTGAGCAGTTTGGTTTATGAAGCAAACGCCAGAGTGA
GAGACCCAGTATATGGCTGTGTTGGTGCCATATCTTTTTTGCAAAACCAA
GTGTCTCAGCTGCAAATGCAACTGGCAGTGGCTGAAGCAGAGATATTGTG
CATCCAGATGCAGCAAGAACCGATGATGCCAACTCCACAAATAGACCCAG
ATGACAAGCCGTTTCTTCTCCAAAATAACCTCCCCCATCAATACCTCAAT
TTTACTTCATCTAGCAATAATGTAATTCATGACTCCCTCAAGAGAGAGAC
CATCTTTGGACATGACATGGTTTCTTAATTAAAATCTGCCCTCTGTACGT
TTTTCAAAAAAAAAAAAAAAA
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