CN185373

Overview
NameCN185373
Unique NameCN185373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.574e-28
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDDPHK-FAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            GG  PC +CK LRR+C   CIFAPYF  +     FA VHKVFGASNVSK+L  +PVH+R+DAV ++ YEA AR+RDP+YGCV  I  LQ QV  LQ +++  +A +
Sbjct:   33 GGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHL 138          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.580e-28
Identity = 59/106 (55.66%), Postives = 75/106 (70.75%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDD-PHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            G  SPC +CK LRR+C  DCIFAPYF  +    +FA +HKVFGASNVSK+L  +P+H R +AV ++ YEA AR+ DPVYGCV  I  LQ QV+ LQ Q+   +A+I
Sbjct:   11 GTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQI 116          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.981e-28
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDD-PHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEIL 398
            G  SPC +CK LRR+C   CIFAP+F  D    +FA VHKVFGASNVSK+L  +PV++R DAV ++ YEA AR+ DPVYGCV  I  LQ QV+ LQ +L+V +++++
Sbjct:   47 GTASPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLI 153          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.020e-27
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDD-PHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            GG  PC +CK LRR+C   CIFAPYF  +     FA VHKVFGASNVSK+L  +P H+R DAV S+ +EA AR+RDP+YGCV  I  LQ QV  LQ +L+  +A +
Sbjct:   13 GGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHL 118          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.613e-27
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPP-DDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI 395
            G   PC +CK LRR+C  DC+FAPYF   +    F  VHKVFGASN SK+L  +P  +R DAV +L YEA AR+RDPVYGCVG I  LQ+QV  LQ +LA  + ++
Sbjct:    7 GCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQL 112          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD14_ARATH (LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.550e-26
Identity = 56/107 (52.34%), Postives = 72/107 (67.29%), Query Frame = 3
Query:   78 MGG-NSPCASCKLLRRRCTKDCIFAPYFPPDD-PHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAE 392
            MGG  SPC  CK LRR+C + C+FAPYF  ++    FA +HKVFGASN SK++  LP H R DAV ++ YEA++R+ DP+YGCV  I  LQ QV  LQ Q+ +   E
Sbjct:    1 MGGLGSPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREE 107          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.778e-25
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 3
Query:   81 GGNSPCASCKLLRRRCTKDCIFAPYFPPDD-PHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAE 392
            G  SPC +CK LRRRC K C+FAPYF  +     FA +H+VFGASN SK+L  LP+  R +A +++ YEA AR +DP+YGCV  I  LQ QV  LQ QL + + +
Sbjct:    3 GSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQ 107          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.379e-24
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   90 SPCASCKLLRRRCTKDCIFAPYFPPDD-PHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAE 392
            SPC +CK LRR+C K C+FAPYF  +     FA +HKVFGASN SK+L  LP+  R +A  ++ YEA AR++DP+YGCV  I  LQ QV  LQ +L + + +
Sbjct:   10 SPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQ 111          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD28_ARATH (LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.436e-23
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 3
Query:   87 NSPCASCKLLRRRCTKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQLAVAEAEI--LCIXXXXXXXXXXXXIDPDDKPFLLQNNLPH 488
            ++PCA+CK LRR+CT+DC+FAPYFP      +  VHKVFGAS+V+ ++  L   QR  A+ +L +EA  +  DPV GC+G I  L +Q+  L+ QLA+ + E+   CI            ++  + P ++  + P+
Sbjct:   10 STPCAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAMDTLAWEAQVQANDPVNGCLGIIYNLLSQIKDLEEQLAIVKNELASYCIVPTFVPPPSMTNLEMHNNPMMIPEHTPN 145          
BLAST of CN185373 vs. ExPASy Swiss-Prot
Match: LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.291e-22
Identity = 53/96 (55.21%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   90 SPCASCKLLRRRCTKDCIFAPYFPPDDPHK-FAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQL 374
            S C +CK LRR+C +DC+F+PYF  +     FA VHKVFGASNVSK L  LP HQR  A  ++ YEA +R+RDPVYGCV  I  L  QV  LQ ++
Sbjct:    6 SSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEI 101          
The following BLAST results are available for this feature:
BLAST of CN185373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
LBD18_ARATH1.574e-2855.66LOB domain-containing protein 18 OS=Arabidopsis th... [more]
LBD16_ARATH4.580e-2855.66LOB domain-containing protein 16 OS=Arabidopsis th... [more]
LBD20_ARATH5.981e-2855.14LOB domain-containing protein 20 OS=Arabidopsis th... [more]
LBD30_ARATH1.020e-2755.66LOB domain-containing protein 30 OS=Arabidopsis th... [more]
LBD31_ARATH6.613e-2754.72LOB domain-containing protein 31 OS=Arabidopsis th... [more]
LBD14_ARATH9.550e-2652.34LOB domain-containing protein 14 OS=Arabidopsis th... [more]
LBD17_ARATH2.778e-2551.43LOB domain-containing protein 17 OS=Arabidopsis th... [more]
LBD29_ARATH1.379e-2450.98LOB domain-containing protein 29 OS=Arabidopsis th... [more]
LBD28_ARATH4.436e-2338.24LOB domain-containing protein 28 OS=Arabidopsis th... [more]
LBD33_ARATH1.291e-2255.21LOB domain-containing protein 33 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185373 ID=CN185373; Name=CN185373; organism=Citrus sinensis; type=EST; length=621bp
ATGCTCTGTTGTATCTCTATAGCCATCTTCTCCTTCCTCCAAGCACTTTT
TTTATTTTTCTTTTTTCACAGAGGAAAATGGGTGGAAATTCTCCATGTGC
CTCTTGCAAGTTGCTGCGTCGCCGTTGCACCAAAGACTGCATCTTTGCTC
CTTACTTCCCTCCTGATGATCCCCACAAGTTTGCCATTGTTCATAAGGTC
TTTGGTGCTAGCAACGTTAGCAAAATGTTGCAGGAGCTTCCGGTGCATCA
AAGGGCAGATGCAGTGAGCAGTTTGGTTTATGAAGCAAACGCCAGAGTGA
GAGACCCAGTATATGGCTGTGTTGGTGCCATATCTTTTTTGCAAAACCAA
GTGTCTCAGCTGCAAATGCAACTGGCAGTGGCTGAAGCAGAGATATTGTG
CATCCAGATGCAGCAAGAACCGATGATGCCAACTCCACAAATAGACCCAG
ATGACAAGCCGTTTCTTCTCCAAAATAACCTCCCCCATCAATACCTCAAT
TTTACTTCATCTAGCAATAATGTAATTCATGACTCCCTCAAGAGAGAGAC
CATCTTTGGACATGACATGGTTTCTTAATTAAAATCTGCCCTCTGTACGT
TTTTCAAAAAAAAAAAAAAAA
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