CN185372

Overview
NameCN185372
Unique NameCN185372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:905..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.521e-62
Identity = 116/167 (69.46%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 777
            LHGL Q+Y+KL E EKNRKL DLLD+L+FNQV+IFVKS SRA ELNKLLV  NFPSI +HS M QEER+ RYK FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLAI+FV S  D ++L ++Q+RF+V I E PE+ +D+STYM
Sbjct:  264 LHGLQQYYLKLDEKEKNRKLADLLDSLEFNQVIIFVKSTSRANELNKLLVASNFPSIAVHSAMPQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISFVGSKEDEEVLEKIQSRFDVKITEFPEEGVDSSTYM 430          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.521e-62
Identity = 119/167 (71.26%), Postives = 138/167 (82.63%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 777
            LHGL Q+YIKLSE EKNRKLN+LLD L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYDMP  AD+YLHRVGRAGRFGTKGL+I+FVSS  D   L  ++ RFEV + E PE+ +D STYM
Sbjct:  276 LHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEEGVDASTYM 442          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.521e-62
Identity = 117/167 (70.06%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 777
            LHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  274 LHGLQQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEDDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.292e-62
Identity = 117/167 (70.06%), Postives = 140/167 (83.83%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 777
            LHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  274 LHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.292e-62
Identity = 117/167 (70.06%), Postives = 140/167 (83.83%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 777
            LHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  273 LHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 439          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.299e-62
Identity = 114/167 (68.26%), Postives = 138/167 (82.63%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 777
            LHGL Q+YIKL E EKNRKL+DLLD+L+FNQV+IFVKS  RA ELNKLL  CNFPSI +HSG+ QEER+ RY+ FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLAI+ V S  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  265 LHGLQQYYIKLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCSCNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVGSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.299e-62
Identity = 116/168 (69.05%), Postives = 137/168 (81.55%), Query Frame = -3
Query:  274 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 777
            LHGL Q Y+KL E EKNRKLNDLLD L+FNQV IFVKSV RA +L+ LL ECNFPSICIHSG+ Q ER++R++ FK   KRILVATD+ GRGID+ERVN+VINYD P  AD+YLHRVGRAGRFGTKGLAI+FVSS +D ++L ++Q RF V I  LPE +D +TYM S
Sbjct:  275 LHGLQQFYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQERFTVAIPTLPETVDPATYMTS 442          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.615e-62
Identity = 118/167 (70.66%), Postives = 137/167 (82.04%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYM 777
            LHGL Q+YI L E EKNRKLN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FV+S  D ++L Q++ RFEV + E P E ID STYM
Sbjct:  266 LHGLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVNSDQDKEVLQQIEKRFEVALPEFPKEGIDASTYM 432          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.251e-61
Identity = 117/166 (70.48%), Postives = 139/166 (83.73%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            LHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  258 LHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.251e-61
Identity = 117/166 (70.48%), Postives = 139/166 (83.73%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            LHGL Q+Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLA+TFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  258 LHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
The following BLAST results are available for this feature:
BLAST of CN185372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_PICGU2.521e-6269.46ATP-dependent RNA helicase SUB2 OS=Pichia guillier... [more]
SUB2_COCIM2.521e-6271.26ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_ASPCL2.521e-6270.06ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_ASPOR3.292e-6270.06ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_ASPNC3.292e-6270.06ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB2_PICST4.299e-6268.26ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]
SUB2_CRYNE4.299e-6269.05ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]
SUB2_CHAGB5.615e-6270.66ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]
DDX39_RAT1.251e-6170.48ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]
DDX39_MOUSE1.251e-6170.48ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185372 ID=CN185372; Name=CN185372; organism=Citrus sinensis; type=EST; length=779bp
GGGGCCCCCGGCACTCTAATACAGCCAAGGTACCAGTTGAATAACATTCC
CAATAGCAGCCCTATCCAGAAGGTATTAAAAGGCTACAAATCCCAAAAAC
AAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCTGACAAATC
TCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAGAAACAAAT
ACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAAATTTTCCA
CATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGATGTATCAAT
CTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTGAACCTGAT
TGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATTGCAAGGCCC
TTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAAGTATCAGC
AGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTCAATGTCAA
TTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGTTCCCCTCC
TTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATGCCAGAATG
GATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTTTAACTCCG
CTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAAAGTCCAAT
GCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCACTCAATTT
GATGTAGTGCTGTACAAGACCATGAAGAG
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