CN185372

Overview
NameCN185372
Unique NameCN185372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:905..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 64/161 (39.75%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  298 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 777
            L G+ Q++I + + E K   L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  235 LEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_ASPFU (ATP-dependent RNA helicase fal1 OS=Aspergillus fumigatus GN=fal1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 64/161 (39.75%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  298 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 777
            L G+ Q++I + + E K   L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  234 LEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 393          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 64/161 (39.75%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  298 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 777
            L G+ Q++I + + E K   L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  235 LEGIKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTS-DDVRILRDIELYYSTQIDEMPMNV 394          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DHH1_YARLI (ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica GN=DHH1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 66/166 (39.76%), Postives = 97/166 (58.43%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q+Y  + E +K   LN L   LD NQ +IF  S  R   L + + E  +     H+ M Q  R   +  F+ G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  G+AI  + + +D   L +++     +IK +P QID + Y+
Sbjct:  237 LRGITQYYAFVDEKQKLHCLNTLFSKLDINQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLI-NWNDRYNLYKIEQELGTEIKPIPAQIDKNLYV 401          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.182e-27
Identity = 68/166 (40.96%), Postives = 97/166 (58.43%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q Y  + E +K   LN L   L  NQ +IF  S +R   L K + E  +     H+ M Q+ R   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + S +D   L +++     +IK +P  ID S Y+
Sbjct:  239 LKGISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLM-SWNDRYSLYKIEQELGTEIKPIPATIDKSLYV 403          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: RH12_ARATH (DEAD-box ATP-dependent RNA helicase 12 OS=Arabidopsis thaliana GN=RH12 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.543e-27
Identity = 68/165 (41.21%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  283 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 777
            L G+ Q+Y  + E +K   LN L   L  NQ +IF  SV+R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG  GLA+  V +  D   + Q +     +IK +P  ID + Y
Sbjct:  333 LMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV-TYEDRFKMYQTEQELGTEIKPIPSNIDQAIY 496          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: RH6_ARATH (DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana GN=RH6 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 68/165 (41.21%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  283 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTY 777
            L G+ Q+Y  + E +K   LN L   L  NQ +IF  SV+R   L K + E  +    IH+ M Q+ R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P ++++YLHRVGR+GRFG  GLA+  V +  D   + Q +     +IK +P  ID + Y
Sbjct:  363 LMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLV-TYEDRFKMYQTEQELGTEIKPIPSLIDKAIY 526          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: FAL1_GIBZE (ATP-dependent RNA helicase FAL1 OS=Gibberella zeae GN=FAL1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 63/161 (39.13%), Postives = 100/161 (62.11%), Query Frame = -3
Query:  298 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 777
            L GL Q++I + + + K   L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV++  D  IL  ++  +   I E+P  +
Sbjct:  237 LEGLKQYFIAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTT-EDVRILRDIELYYSTQIDEMPMNV 396          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 68/166 (40.96%), Postives = 94/166 (56.63%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            L G+ Q+Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+G +GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGGSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: DDX6_DROME (Putative ATP-dependent RNA helicase me31b OS=Drosophila melanogaster GN=me31B PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 67/173 (38.73%), Postives = 100/173 (57.80%), Query Frame = -3
Query:  259 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS*WRSV 777
            L G+ Q+Y  + E +K   LN L   L  NQ +IF  S  R   L K + E  +    IH+ M+Q  R   +  F++G  R LV +DL  RGID++ VN+VIN+D P  A+TYLHR+GR+GRFG  G+AI  ++     D L++++     +IK +P+ ID + Y+ +   SV
Sbjct:  267 LKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFD-LHRIEKELGTEIKPIPKVIDPALYVANVGASV 438          
The following BLAST results are available for this feature:
BLAST of CN185372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASPNC1.182e-2739.75ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
FAL1_ASPFU1.182e-2739.75ATP-dependent RNA helicase fal1 OS=Aspergillus fum... [more]
FAL1_ASPCL1.182e-2739.75ATP-dependent RNA helicase fal1 OS=Aspergillus cla... [more]
DHH1_YARLI1.182e-2739.76ATP-dependent RNA helicase DHH1 OS=Yarrowia lipoly... [more]
DHH1_CANAL1.182e-2740.96ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
RH12_ARATH1.543e-2741.21DEAD-box ATP-dependent RNA helicase 12 OS=Arabidop... [more]
RH6_ARATH2.016e-2741.21DEAD-box ATP-dependent RNA helicase 6 OS=Arabidops... [more]
FAL1_GIBZE2.016e-2739.13ATP-dependent RNA helicase FAL1 OS=Gibberella zeae... [more]
DDX6_PONAB2.016e-2740.96Probable ATP-dependent RNA helicase DDX6 OS=Pongo ... [more]
DDX6_DROME2.016e-2738.73Putative ATP-dependent RNA helicase me31b OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185372 ID=CN185372; Name=CN185372; organism=Citrus sinensis; type=EST; length=779bp
GGGGCCCCCGGCACTCTAATACAGCCAAGGTACCAGTTGAATAACATTCC
CAATAGCAGCCCTATCCAGAAGGTATTAAAAGGCTACAAATCCCAAAAAC
AAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCTGACAAATC
TCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAGAAACAAAT
ACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAAATTTTCCA
CATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGATGTATCAAT
CTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTGAACCTGAT
TGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATTGCAAGGCCC
TTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAAGTATCAGC
AGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTCAATGTCAA
TTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGTTCCCCTCC
TTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATGCCAGAATG
GATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTTTAACTCCG
CTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAAAGTCCAAT
GCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCACTCAATTT
GATGTAGTGCTGTACAAGACCATGAAGAG
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