CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.051e-72
Identity = 135/188 (71.81%), Postives = 157/188 (83.51%), Query Frame = 1
Query:  178 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            D V T A G+ +        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ E   GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct:   16 DEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 203          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 6.815e-72
Identity = 130/168 (77.38%), Postives = 150/168 (89.29%), Query Frame = 1
Query:  214 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ E   GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct:   36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 203          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.815e-72
Identity = 130/168 (77.38%), Postives = 150/168 (89.29%), Query Frame = 1
Query:  214 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ E   GQV+ LV+CHTRELA+QI  E+ERFS Y+P++KVAVF+GG++IK  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct:   36 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 203          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 6.815e-72
Identity = 131/183 (71.58%), Postives = 151/183 (82.51%), Query Frame = 1
Query:  169 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            QAP         +  K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ E   GQVT LV+CHTRELA+QI  E+ERFS Y+P +KV+VF+GG++IK  +++LK  CP +VVGTPGRILAL R++  SLKNV+HF+LDECDKMLE
Sbjct:   20 QAPQESTPAPPKKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLE 202          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX39_MOUSE (ATP-dependent RNA helicase DDX39 OS=Mus musculus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.162e-71
Identity = 130/183 (71.04%), Postives = 151/183 (82.51%), Query Frame = 1
Query:  169 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            QAP         +  K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ E   GQV+ LV+CHTRELA+QI  E+ERFS Y+P +KV+VF+GG++IK  +D+LK  CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE
Sbjct:   20 QAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLE 202          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.518e-71
Identity = 133/188 (70.74%), Postives = 154/188 (81.91%), Query Frame = 1
Query:  178 DSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            D V   A G+ +        K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ E   GQV+ LV+CHTRELA+QI  E+ERFS Y+P +KVAVF+GG+ +K  +++LK  CP IVVGTPGRILALAR+K L+LK+++HFILDECDKMLE
Sbjct:   16 DEVENAAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 203          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX39_RAT (ATP-dependent RNA helicase DDX39 OS=Rattus norvegicus GN=Ddx39 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.382e-71
Identity = 129/183 (70.49%), Postives = 150/183 (81.97%), Query Frame = 1
Query:  169 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            Q P         +  K  YV IHSSGFRDFLLKPELLRAIVD GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFVL+TLQQ E   GQV+ LV+CHTRELA+QI  E+ERFS Y+P +KV+VF+GG++IK  +D+LK  CP +VVGTPGRILAL R + L+L+NV+HF+LDECDKMLE
Sbjct:   20 QVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLE 202          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.068e-65
Identity = 124/178 (69.66%), Postives = 146/178 (82.02%), Query Frame = 1
Query:  199 NGEAAKKG----YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVT-ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            N EA KK     YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMGKTAVFVL+TLQQ E +       LV+CHTRELA+QI  E+ERFS Y+P +KVAVF+GG+ I+  ++ LK+  P IVVGTPGRILAL R+K L+LK ++HF+LDECDKMLE
Sbjct:   23 NQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLE 200          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.054e-64
Identity = 122/173 (70.52%), Postives = 144/173 (83.24%), Query Frame = 1
Query:  202 GEAAK-KG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            G+A K KG Y  IHSSGFRDFLLKPE+LRAI D GFEHPSEVQHECIPQAILGMDV+CQAKSGMGKTAVFV++TLQQ E   G+V+ + +CHTRELA+QI  E+ERFS YLP +KVAVF+GG+ IK  ++ L N+CP IVVGTPGR+LALAR   L L  V++F+LDECDKM+
Sbjct:   26 GDARKTKGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMI 198          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 244.973 bits (624), Expect = 3.066e-64
Identity = 125/180 (69.44%), Postives = 147/180 (81.67%), Query Frame = 1
Query:  190 TKANGEAA-KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            T  NGE + KKG YVGIHS+GFRDFLLKPELLRAI DSGFEHPSEVQ  CIPQ+ILG DV+CQAKSGMGKTAVFVLSTLQQ E   G+V+ LVLCHTRELA+QI +E+ RFS YLPD++ AVFYGG+NIK   +    K++ P IVV TPGR+ AL R+K L + +V+HF+LDECDK+LE
Sbjct:   32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLE 211          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UAP56_CANFA1.051e-7271.81Spliceosome RNA helicase BAT1 OS=Canis familiaris ... [more]
UAP56_RAT6.815e-7277.38Spliceosome RNA helicase Bat1 OS=Rattus norvegicus... [more]
UAP56_MOUSE6.815e-7277.38Spliceosome RNA helicase Bat1 OS=Mus musculus GN=B... [more]
DDX39_HUMAN6.815e-7271.58ATP-dependent RNA helicase DDX39 OS=Homo sapiens G... [more]
DDX39_MOUSE1.162e-7171.04ATP-dependent RNA helicase DDX39 OS=Mus musculus G... [more]
UAP56_CHICK1.518e-7170.74Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=... [more]
DDX39_RAT3.382e-7170.49ATP-dependent RNA helicase DDX39 OS=Rattus norvegi... [more]
UAP56_DROME8.068e-6569.66ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
UAP56_CAEEL1.054e-6470.52Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
SUB2_SCHPO3.066e-6469.44ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
back to top