CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A_BOTFB (ATP-dependent RNA helicase eIF4A OS=Botryotinia fuckeliana (strain B05.10) GN=tif1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 1
Query:  262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N  Q  AL+L  TRELA QI         ++ +++     GG +++     L+ + PQ+VVGTPGR+  + + + L   +++ F+LDE D+ML
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKLDPNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NVECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDSMKMFVLDEADEML 180          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH6_ORYSJ (DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica GN=Os04g0533000 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 62/157 (39.49%), Postives = 92/157 (58.60%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F D+ LK ELL  I + GFE PS +Q E IP A+ G D++ +AK+G GKTA F +  L++ + +   +  ++L  TRELA Q     +    +L  I+V V  GG ++K   D+++   P  ++VGTPGRIL L +     LKN    ++DE DK+L
Sbjct:  126 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDKNAIQVVILVPTRELALQTSQVCKELGKHL-KIQVMVTTGGTSLK--DDIVRLYQPVHLLVGTPGRILDLTKKGVCVLKNCSMLVMDEADKLL 279          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 61/156 (39.10%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F D  + P +LRAI D G+E P+ +Q   IP  + G DV+  A++G GKTA F +  L + ++      ALVL  TRELA Q+   F R+  YL  + V   YGG +  +    L+    Q+VVGTPGR++       L L  V   +LDE D+ML
Sbjct:   15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA-QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEML 169          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 64/161 (39.75%), Postives = 89/161 (55.28%), Query Frame = 1
Query:  235 HSSGFRDFL-LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            H+     FL L P +++++   G+  PS +Q  CIP  + G DV+  A++G GKTA F L  L    +N      LVL  TRELA Q+   F  FS Y+  I V   YGG   ++    L+ + PQIVVGTPGR+L   +   L+L N+   +LDE D+ML
Sbjct:    3 HTESTFSFLGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALR-QGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEML 162          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 61/151 (40.40%), Postives = 86/151 (56.95%), Query Frame = 1
Query:  262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            L P +++++ + G+  PS +Q  CIP  + G DV+  A++G GKTA F L  L    +N      LVL  TRELA Q+   F  FS Y+  I V   YGG   ++    L+ + PQIVVGTPGR+L   +   L+L N+   +LDE D+ML
Sbjct:   13 LNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALR-QGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEML 162          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 65/156 (41.67%), Postives = 90/156 (57.69%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F +  LK ELLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N  Q  AL+L  TRELA QI         ++ +I+     GG +++     L+ + PQ+VVGTPGR+  + + + L    ++ F+LDE D+ML
Sbjct:   25 FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTSVRDDMKALQ-DGPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEADEML 178          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F +F LK +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+  L+       ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+L+ + P  IVVGTPGRIL LA      L     FI+DE DK+L
Sbjct:   38 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTTLR--DDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL 191          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP9_MAGGR (ATP-dependent RNA helicase DBP9 OS=Magnaporthe grisea GN=DBP9 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.479e-23
Identity = 64/166 (38.55%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ----QTELNPG--QVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            SS F D  L P LL+A+    F+ P+ VQ + IP A+ G DV+ +AK+G GKTA +VL  LQ    + ++NPG   +++L+L  TREL  Q+  E ERFS +   +++V      V+  + + LL++  P IVV TP           LSL  + H +LDE D +L
Sbjct:   42 SSSFADLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPILQAVLKRKQINPGATYISSLILVPTRELTVQVTKEVERFSAFCAKEVQVVGLTDKVSDAVQRSLLQSSSPDIVVSTPSTAWRNVDSGALSLDKLTHLVLDEADLVL 207          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 66/159 (41.51%), Postives = 89/159 (55.97%), Query Frame = 1
Query:  238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            +  F    LKPELLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI         ++  ++     GG N++     L+ + PQ+VVGTPGR+  + + + L    ++ FILDE D+ML
Sbjct:   24 TDSFDSMDLKPELLRGIYAYGFERPSAIQQRAIMPIIKGSDVIAQAQSGTGKTATFSISALQKIDPNLKACQALILAPTRELAQQIQKVVVAIGDFM-SLECHACIGGTNVREDMKALQ-DGPQVVVGTPGRVQDMIQRRVLRTDQMKLFILDEADEML 180          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DHH1_PICGU (ATP-dependent RNA helicase DHH1 OS=Pichia guilliermondii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 62/157 (39.49%), Postives = 91/157 (57.96%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F +F LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++  LQQ +    ++  L+L  TRELA Q     +    +L  ++  V  GG  ++   D+++ + P  I+VGTPGR+L LA            F++DE DKML
Sbjct:   31 FEEFGLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPALQQVKTKLNKIQVLILVPTRELALQTSQVVKTLGKHL-KLQCMVTTGGTLLR--DDVMRLDEPVHILVGTPGRVLDLAARSIADFSECPMFVMDEADKML 184          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_BOTFB2.626e-2341.72ATP-dependent RNA helicase eIF4A OS=Botryotinia fu... [more]
RH6_ORYSJ3.429e-2339.49DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sat... [more]
DEAD_MYCTU3.429e-2339.10Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
DEAD_BUCAP3.429e-2339.75Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DEAD_BUCAI3.429e-2340.40Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
IF4A_MAGGR4.479e-2341.67ATP-dependent RNA helicase eIF4A OS=Magnaporthe gr... [more]
DHH1_MAGGR4.479e-2342.04ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
DBP9_MAGGR4.479e-2338.55ATP-dependent RNA helicase DBP9 OS=Magnaporthe gri... [more]
IF4A_ASPCL5.850e-2341.51ATP-dependent RNA helicase eIF4A OS=Aspergillus cl... [more]
DHH1_PICGU7.640e-2339.49ATP-dependent RNA helicase DHH1 OS=Pichia guillier... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
back to top