CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:25..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.230e-64
Identity = 123/187 (65.78%), Postives = 147/187 (78.61%), Query Frame = 1
Query:  175 PDSVATKANGEAA---KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            P + A + NG+ A   KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ ECIPQAILG DV+CQAKSGMGKTAVFVL+ LQQ E   G+V+ ++LCHTRELAYQI +EF RFS ++ +++  VFYGG  I   +++L  K +CP IVVGTPGR +AL RDK L+   V+HF+LDECDKMLE
Sbjct:   33 PPAPAAETNGDKADGDKKGSYVGIHSTGFRDFLLKPELLRAISDLGFEHPSEVQQECIPQAILGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLE 219          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3)

HSP 1 Score: 243.047 bits (619), Expect = 1.165e-63
Identity = 121/187 (64.71%), Postives = 149/187 (79.68%), Query Frame = 1
Query:  166 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            + AP++ A  A+ +A KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +  PG++T LV+CHTRELAYQI +E+ RFS Y+PD+K  VFYGG+ I    + LKN+  CP IVV TPGR+ AL  +K + L NV+ F++DECDK+LE
Sbjct:   22 SNAPEAGADGADKDADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLE 208          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.390e-63
Identity = 126/198 (63.64%), Postives = 148/198 (74.75%), Query Frame = 1
Query:  172 APDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            A  + A  ANG+AAKKG              YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+
Sbjct:   21 AATTAAPAANGDAAKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLD 218          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.682e-62
Identity = 122/183 (66.67%), Postives = 143/183 (78.14%), Query Frame = 1
Query:  178 DSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            D   T   G A KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P I+VGTPGR+ AL RDK LSL+NV+ F+LDECDKML+
Sbjct:   37 DGELTVTGGRADKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLD 219          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_CHAGB (ATP-dependent RNA helicase SUB2 OS=Chaetomium globosum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.870e-62
Identity = 125/190 (65.79%), Postives = 146/190 (76.84%), Query Frame = 1
Query:  172 APDSVATKANGEAA-----KKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            AP S   K +  AA     KKG YVGIHS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQA+LG D+ICQAKSG+GKTAVFVL+TLQQ E   G+ + LV+CHTRELA+QI +E+ RFS Y+PDIK  VFYGG  I+   ++LKN+   P I+VGTPGR+ AL RDK L L NVR F+LDECDKML+
Sbjct:   21 APASNGKKGDAAAAAQNVDKKGSYVGIHSTGFRDFLLKPELLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDAEVLKNKETHPHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDKMLD 210          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.870e-62
Identity = 122/179 (68.16%), Postives = 142/179 (79.33%), Query Frame = 1
Query:  190 TKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   +LL N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+
Sbjct:   39 TVSGGRPDKKGSYVGIHSTGFRDFLLKEELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLD 217          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.895e-62
Identity = 123/200 (61.50%), Postives = 148/200 (74.00%), Query Frame = 1
Query:  166 AQAPDSVATKANGEAAKKG--------------YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL--KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            A A  + A  ANG A KKG              YVG+HS+GFRDFLLKPELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  ++   ++L  K+  P IVVGTPGR+ AL R+K LSL+N++ F+LDECDKML+
Sbjct:   21 AAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHSTGFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLD 220          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.895e-62
Identity = 123/187 (65.78%), Postives = 144/187 (77.01%), Query Frame = 1
Query:  166 AQAPDSVATKANGEAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            AQ      T + G   KKG YVGIHS+GFRDFLLK ELLRAI D GFEHPSEVQ  CIP AIL +DV+CQAKSG+GKTAVFVL+TL Q E  PG+ + LV+CHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   ++L N+   P IVVGTPGR+ AL RDK LSL+NV+ F+LDECDKML+
Sbjct:   32 AQDKKGDLTVSGGRPDKKGSYVGIHSTGFRDFLLKGELLRAITDCGFEHPSEVQQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDECDKMLD 218          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.090e-61
Identity = 116/182 (63.74%), Postives = 142/182 (78.02%), Query Frame = 1
Query:  178 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE--CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            ++   K      K  YVGIHS+GFRDFLLKPELLRAIVD GFEHPSEVQ  CIPQ+ILG DV+CQAK+G+GKTAVFVLSTLQQ E  PG+ + +VLCHTRELAYQI +E+ RFS YLPD+K AVFYGG  I+   +L++N+   P ++V TPGR+ AL RDK L L NV+ F++DECDK+L+
Sbjct:   36 ETTTVKEENTEQKGSYVGIHSTGFRDFLLKPELLRAIVDCGFEHPSEVQQVCIPQSILGTDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPDVKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDKVLD 217          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SUB2_PICST (ATP-dependent RNA helicase SUB2 OS=Pichia stipitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.090e-61
Identity = 118/174 (67.82%), Postives = 140/174 (80.46%), Query Frame = 1
Query:  205 EAAKKG-YVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK--IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            EA KKG YVGIH++GFRDFLLKPELLRAI D GFEHPSEVQ  CIPQ+ILG DV+CQAKSG+GKTAVFVLSTLQQ +  PG+++ LV+CHTRELAYQI +E+ RFS Y+PD+K  VFYGG  IK  I K   K+ CP IVV TPGR+ AL  +K + L NV+ F++DECDK+LE
Sbjct:   36 EADKKGSYVGIHATGFRDFLLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKSKDTCPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLE 209          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_CRYNE5.230e-6465.78ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]
SUB2_PICGU1.165e-6364.71ATP-dependent RNA helicase SUB2 OS=Pichia guillier... [more]
SUB2_ASPOR3.390e-6363.64ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_EMENI1.682e-6266.67ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
SUB2_CHAGB2.870e-6265.79ATP-dependent RNA helicase SUB2 OS=Chaetomium glob... [more]
SUB2_ASPNC2.870e-6268.16ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]
SUB2_COCIM4.895e-6261.50ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_ASPCL4.895e-6265.78ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
SUB2_YARLI1.090e-6163.74ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]
SUB2_PICST1.090e-6167.82ATP-dependent RNA helicase SUB2 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
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