CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 51/159 (32.08%), Postives = 89/159 (55.97%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLE 717
            F +  L PEL+ A  +  +  P+ +Q + IP A+ G D+I  A++G GKTA F +  L Q   +     A +L  TRELA QI   F+   + L  ++     GG+++    +DL++   P I++ TPGR++  L   K  +L+ +++ ++DE D++L+
Sbjct:   69 FTELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGS-LMGVRSTCIVGGMSMMDQARDLMRK--PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD 224          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_HAMD5 (ATP-dependent RNA helicase rhlB OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rhlB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 55/164 (33.54%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVT-------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P +++AI + GF H + +Q    P  + G DV  QA++G GKT  F+ S       N    T       AL++  TRELA QI  + E  S +   +K+ + YGG        +L++    I++GTPGRI+  A+   + L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQF-TSLKMGLAYGGDGYDKQLKILESGV-DILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV----LSTLQQTELNPGQ-VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            S F  F    +LL  I  S +  P+ +Q + IP A+ G D+I  AK+G GKTA F+    +  + Q EL P     A+++C TREL  QI  E +RF        VAV+ GG   +  K L   E  +IVV TPGR++   + K  +L+ V + + DE D+M +
Sbjct:  250 SSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL--QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFD 411          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE-CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            S F    ++ +LLR I   GFE PS +Q   +   I G DVI QA+SG GKT++  LS  Q  +    +V AL+L  TRELA Q          ++ +I+V    GG +  I +D+ K E    +V GTPGR+  + + + L  + ++  ILDE D+ML
Sbjct:   31 SSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFI-NIQVHACIGGKS--IGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEML 186          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 58/171 (33.92%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  205 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKML 714
            E  K     +    F +  +   L  A    G+  PS++Q   +P A+ G DVI  A++G GKT  F +  LQ    +P     LVL  TRELA+QI  +FE   + +  +  AV  GGV++      L    P I+V TPGR++  L   K  +LK ++  I+DE D++L
Sbjct:   32 EIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGI-GLIAAVIVGGVDMAAQAMALARR-PHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRIL 200          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKML 714
            F +  LKP+LL+ +   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L + E +      L L  T ELA Q     E+   + P++K+A    G  ++  + + +    QIV+GTPG +L   ++ K +  K ++ F+LDE D M+
Sbjct:   93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 247          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEFN (ATP-dependent RNA helicase rhlB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 51/164 (31.10%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ-------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF LKPE+L A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T                +  A+++  TRELA QI  + +  + +   +KV + YGG + +  + +L ++   I++GT GRI+   R   +SL +++  +LDE D+M +
Sbjct:   11 FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAH-TGLKVGIVYGGESYETQRAVL-DKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ--------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK---DLSLKNVRHFILDECDKMLE 717
            F +  + P  ++A+ D+G+   + VQ   +P  + G DV+ +AK+G GK+A F+L  ++         T      + +L+LC TRELA Q+  E      Y   I V    GG   K+ +  L+++  QI+V TPGR+L    +K    + L  ++  +LDE D +L+
Sbjct:  344 FEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLD 511          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH13_ORYSJ (DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica GN=Os04g0510400 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQ--------------------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR---ILALARDKDLSLKNVRHFILDECDKMLE 717
            +R+  L P L+ A+   GF+ P+ +Q  C P A   G DVI  A++G GKT  F L  LQ+                           + AL+L  TRELA Q+C   +  + +L  I+V    GG++++  + LLK + P+IVVGTPGR   +++      + L ++  F+LDE D+M+E
Sbjct:  200 WRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFL-RIQVVPIVGGLSMEKQERLLKRK-PEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIE 378          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH13_ORYSI (DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica GN=OSIGBa0157K09-H0214G12.9 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQ--------------------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR---ILALARDKDLSLKNVRHFILDECDKMLE 717
            +R+  L P L+ A+   GF+ P+ +Q  C P A   G DVI  A++G GKT  F L  LQ+                           + AL+L  TRELA Q+C   +  + +L  I+V    GG++++  + LLK + P+IVVGTPGR   +++      + L ++  F+LDE D+M+E
Sbjct:  200 WRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFL-RIQVVPIVGGLSMEKQERLLKRK-PEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIE 378          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_KLULA8.182e-1732.08ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces ... [more]
RHLB_HAMD58.182e-1733.54ATP-dependent RNA helicase rhlB OS=Hamiltonella de... [more]
DDX42_XENLA8.182e-1736.59ATP-dependent RNA helicase DDX42 OS=Xenopus laevis... [more]
RH2_ORYSJ1.069e-1637.11DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sat... [more]
DDX47_CAEEL1.069e-1633.92Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]
DD19A_HUMAN1.069e-1633.33ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
RHLB_SHEFN1.396e-1631.10ATP-dependent RNA helicase rhlB OS=Shewanella frig... [more]
RH48_ORYSJ1.396e-1630.95DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sa... [more]
RH13_ORYSJ1.396e-1633.15DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sa... [more]
RH13_ORYSI1.396e-1633.15DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
back to top