CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17 Identity = 51/159 (32.08%), Postives = 89/159 (55.97%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLE 717 F + L PEL+ A + + P+ +Q + IP A+ G D+I A++G GKTA F + L Q + A +L TRELA QI F+ + L ++ GG+++ +DL++ P I++ TPGR++ L K +L+ +++ ++DE D++L+ Sbjct: 69 FTELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGS-LMGVRSTCIVGGMSMMDQARDLMRK--PHIIIATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLD 224
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_HAMD5 (ATP-dependent RNA helicase rhlB OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rhlB PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17 Identity = 55/164 (33.54%), Postives = 85/164 (51.83%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVT-------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P +++AI + GF H + +Q P + G DV QA++G GKT F+ S N T AL++ TRELA QI + E S + +K+ + YGG +L++ I++GTPGRI+ A+ + L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVIKAIENQGFYHCTPIQALSFPITLAGRDVAAQAQTGTGKTLAFLASVFNYLLTNAADETRQCEQPRALIMVPTRELAIQIYTDAETLSQF-TSLKMGLAYGGDGYDKQLKILESGV-DILIGTPGRIIDYAKQNFIHLNALQVIVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17 Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 1 Query: 241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFV----LSTLQQTELNPGQ-VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 S F F +LL I S + P+ +Q + IP A+ G D+I AK+G GKTA F+ + + Q EL P A+++C TREL QI E +RF VAV+ GG + K L E +IVV TPGR++ + K +L+ V + + DE D+M + Sbjct: 250 SSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKAL--QEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFD 411
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH2_ORYSJ (DEAD-box ATP-dependent RNA helicase 2 OS=Oryza sativa subsp. japonica GN=Os01g0639100 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16 Identity = 59/159 (37.11%), Postives = 86/159 (54.09%), Query Frame = 1 Query: 241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE-CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 S F ++ +LLR I GFE PS +Q + I G DVI QA+SG GKT++ LS Q + +V AL+L TRELA Q ++ +I+V GG + I +D+ K E +V GTPGR+ + + + L + ++ ILDE D+ML Sbjct: 31 SSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFI-NIQVHACIGGKS--IGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEML 186
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16 Identity = 58/171 (33.92%), Postives = 86/171 (50.29%), Query Frame = 1 Query: 205 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKML 714 E K + F + + L A G+ PS++Q +P A+ G DVI A++G GKT F + LQ +P LVL TRELA+QI +FE + + + AV GGV++ L P I+V TPGR++ L K +LK ++ I+DE D++L Sbjct: 32 EIEKDDEEDVKEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGI-GLIAAVIVGGVDMAAQAMALARR-PHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRIL 200
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16 Identity = 53/159 (33.33%), Postives = 87/159 (54.72%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKML 714 F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L + E + L L T ELA Q E+ + P++K+A G ++ + + + QIV+GTPG +L ++ K + K ++ F+LDE D M+ Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 247
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEFN (ATP-dependent RNA helicase rhlB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rhlB PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16 Identity = 51/164 (31.10%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ-------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF LKPE+L A+ ++GFE + +Q +P + D+ QA++G GKT F+++T + A+++ TRELA QI + + + + +KV + YGG + + + +L ++ I++GT GRI+ R +SL +++ +LDE D+M + Sbjct: 11 FADFPLKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAH-TGLKVGIVYGGESYETQRAVL-DKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16 Identity = 52/168 (30.95%), Postives = 87/168 (51.79%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ--------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK---DLSLKNVRHFILDECDKMLE 717 F + + P ++A+ D+G+ + VQ +P + G DV+ +AK+G GK+A F+L ++ T + +L+LC TRELA Q+ E Y I V GG K+ + L+++ QI+V TPGR+L +K + L ++ +LDE D +L+ Sbjct: 344 FEECGISPLTVKALTDAGYVQTTVVQETALPMCLEGKDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQRRLESDPCQILVATPGRLLDHIENKSSFSVRLMGLKLLVLDEADHLLD 511
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH13_ORYSJ (DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica GN=Os04g0510400 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16 Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQ--------------------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR---ILALARDKDLSLKNVRHFILDECDKMLE 717 +R+ L P L+ A+ GF+ P+ +Q C P A G DVI A++G GKT F L LQ+ + AL+L TRELA Q+C + + +L I+V GG++++ + LLK + P+IVVGTPGR +++ + L ++ F+LDE D+M+E Sbjct: 200 WRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFL-RIQVVPIVGGLSMEKQERLLKRK-PEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIE 378
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH13_ORYSI (DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. indica GN=OSIGBa0157K09-H0214G12.9 PE=2 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16 Identity = 60/181 (33.15%), Postives = 93/181 (51.38%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQ--------------------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR---ILALARDKDLSLKNVRHFILDECDKMLE 717 +R+ L P L+ A+ GF+ P+ +Q C P A G DVI A++G GKT F L LQ+ + AL+L TRELA Q+C + + +L I+V GG++++ + LLK + P+IVVGTPGR +++ + L ++ F+LDE D+M+E Sbjct: 200 WRELRLHPLLITAVRRLGFKEPTPIQKACFPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEQEKAMRLSREDESTQDENSRESPLRALILTPTRELAKQVCDHLKEAAKFL-RIQVVPIVGGLSMEKQERLLKRK-PEIVVGTPGRLWELMSTGNQHLIKLHSLSFFVLDEADRMIE 378 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |