CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_DEBHA (ATP-dependent RNA helicase DBP8 OS=Debaryomyces hansenii GN=DBP8 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 58/160 (36.25%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714
            F +  +   L  A+       P+ +Q  CIP+ + G D I  AK+G GKT  F    L Q   +P  +  LVL  TRELA QI  +F    + + +IKV+V  GG +I + + L     P  VV TPGR    IL    D    L+ V++ ILDE D++L
Sbjct:    3 FEELGVSKWLSEALNSMKIHTPTTIQSACIPKILKGHDCIGGAKTGSGKTIAFAAPMLTQWSEDPSGIYGLVLTPTRELALQIAEQFAALGSSM-NIKVSVIVGGEDI-VKQALELQRRPHFVVATPGRLADHILNSGEDTVCGLRRVKYLILDEADRLL 160          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP5_SCHPO (ATP-dependent RNA helicase dbp5 OS=Schizosaccharomyces pombe GN=dbp5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 53/159 (33.33%), Postives = 88/159 (55.35%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F +  LKPELL+ I    F+ PS++Q + +P  +     ++I Q++SG GKTA F L+ L + + +  +  A+ L  +RELA QI         Y  ++K A    G+   + K    +   QIV+GTPG ++ L + + L  ++++ F+LDE D ML+
Sbjct:  116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAF---GIKDSVPKGAKIDA--QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 268          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SRMB_ECOLI (ATP-dependent RNA helicase srmB OS=Escherichia coli (strain K12) GN=srmB PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ----TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F +  L   LL A+ D GF  P+ +Q   IP A+ G DV+  A +G GKTA ++L  LQ          G    L+L  TRELA Q+       + +   + +A   GGV    H ++  +E   IVV T GR+L   ++++   + V   ILDE D+ML+
Sbjct:    6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH-THLDIATITGGVAYMNHAEVF-SENQDIVVATTGRLLQYIKEENFDCRAVETLILDEADRMLD 164          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 59/194 (30.41%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  166 AQAPDSVATKANGEAA--------KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRIL--ALARDKDLSLKNVRHFILDECDKML 714
            +QA +   T +  EAA        ++G+     S FR+  L PEL+ A  +  F  P+ +Q + IP A+ G D+I  A++G GKTA F +  L +   +     A +L  TRELA QI   F+   + L  ++     GG+N+    +DL++   P I++ TPGR++       +  +L+  +  ++DE D++L
Sbjct:   38 SQATEEANTASETEAAVIEETAEPEEGF-----SSFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGS-LMGVRTTCIVGGMNMMDQARDLMRK--PHIIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLL 223          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEDO (ATP-dependent RNA helicase rhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rhlB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 52/166 (31.33%), Postives = 94/166 (56.63%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL---------QQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L  E+++A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T          Q  ELN  Q  A+++  TRELA QI  +    + +   +KV + YGG + ++ +++L ++   I++GT GRI+   R   +SL +++  +LDE D+M +
Sbjct:   11 FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNHLLTTPAPQARELN--QPRAIIMAPTRELAIQIAKDANLLAKH-TGLKVGIVYGGESYEVQREVL-DKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 54/159 (33.96%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKML 714
            F +  LKP+LL+ +   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L Q E        L L  T ELA Q     E+   + P++K+A    G  ++  + + +    QIV+GTPG +L   ++ K +  K ++ F+LDE D M+
Sbjct:   94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISE----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP9_ASPOR (ATP-dependent RNA helicase dbp9 OS=Aspergillus oryzae GN=dbp9 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 54/163 (33.13%), Postives = 87/163 (53.37%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTELNPGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F    L P L +A++   F  P+ VQ + IP A+ G D++ +AK+G GKTA +VL  LQ       T+ +    T L+L  TRELA Q+ +    F+ +   D++       V+  + + +L  + P +VV TP R++       LSL+N+ H ++DE D +L
Sbjct:   29 FESLNLDPRLRQALIKEKFTKPTLVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKATDPSFKATTGLILVPTRELAEQVQNVVTTFAAFCGKDVRSVNLTQKVSDAVQRTMLA-DYPDLVVSTPARVVTNLGSSALSLENLTHLVIDEADLVL 190          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_EMENI (ATP-dependent RNA helicase dbp10 OS=Emericella nidulans GN=dbp10 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  190 TKANGEAAK-KGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTA--LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            T AN ++A  KG       GF+   L   LL+AI   GF  P+ +Q + IP  +   DV+  A++G GKTA FV+  +++ + +  +  A  L+L  +RELA Q     +       D+K  +  GG +++    ++    P IV+ TPGR L L  + +L L ++++ + DE D++ E
Sbjct:   73 TSANRKSANLKGRTVKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPSRELALQTLKVVKELGKG-TDLKSVLLVGGDSLEEQFGMMAGN-PDIVIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFE 249          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_COCIM (ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 54/179 (30.17%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  187 ATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            A+   G   KKG       GF+   L   LL+AI   GF  P+ +Q + IP  +   DV+  A++G GKTA FV+  +++ + +  +V    L+L  +RELA Q     +       D+K  +  GG +++     +    P I++ TPGR L L  + +L L ++++ + DE D++ E
Sbjct:   69 ASNLKGRTVKKG------GGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRG-TDLKCVLLVGGDSLEEQFGYMAGN-PDIIIATPGRFLHLKVEMNLDLSSIKYVVFDEADRLFE 239          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH35A_ORYSJ (DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp. japonica GN=Os02g0150100 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 58/170 (34.12%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ---QTELN----PGQ-VTALVLCHTRELAYQICHEFERFSTYL-----PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            FRD  L   +LR + + G   P+ +Q + +P  + G D+I  A +G GKT VFVL  +    Q E+     PG+    +++C +RELA Q     E+F   L     P+I+  +  GGV+++   D++K     IVV TPGR+  L   K ++L N R+  LDE D++++
Sbjct:  184 FRDLRLPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGV-HIVVATPGRLKDLLAKKKMNLDNCRYLTLDEADRLVD 352          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_DEBHA1.396e-1636.25ATP-dependent RNA helicase DBP8 OS=Debaryomyces ha... [more]
DBP5_SCHPO1.396e-1633.33ATP-dependent RNA helicase dbp5 OS=Schizosaccharom... [more]
SRMB_ECOLI1.823e-1634.16ATP-dependent RNA helicase srmB OS=Escherichia col... [more]
RRP3_ASHGO1.823e-1630.41ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypi... [more]
RHLB_SHEDO1.823e-1631.33ATP-dependent RNA helicase rhlB OS=Shewanella deni... [more]
DD19B_HUMAN1.823e-1633.96ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]
DBP9_ASPOR1.823e-1633.13ATP-dependent RNA helicase dbp9 OS=Aspergillus ory... [more]
DBP10_EMENI1.823e-1631.28ATP-dependent RNA helicase dbp10 OS=Emericella nid... [more]
DBP10_COCIM1.823e-1630.17ATP-dependent RNA helicase DBP10 OS=Coccidioides i... [more]
RH35A_ORYSJ2.380e-1634.12DEAD-box ATP-dependent RNA helicase 35A OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
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