CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16 Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 193 KANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKM 711 K GE A K S GF L E+ R + G+ P+ +Q + +P + G D+ A++G GKTA F++ +Q+ + + AL+L TR+LA Q ++ + D+K+++ GG +++ + L E P I++ TPGR++ LA +DL+L+ V + + DE D + Sbjct: 35 KREGEGASKRKA--KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFT-DLKISLIVGGDSMESQFEELA-ENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSL 206
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16 Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 1 Query: 193 KANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKM 711 K GE A K S GF L E+ R + G+ P+ +Q + +P + G D+ A++G GKTA F++ +Q+ + + AL+L TR+LA Q ++ + D+K+++ GG +++ + L E P I++ TPGR++ LA +DL+L+ V + + DE D + Sbjct: 35 KREGEGASKKKA--KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFT-DLKISLIVGGDSMESQFEELA-ENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSL 206
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_ASPTN (ATP-dependent RNA helicase dbp8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp8 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16 Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = 1 Query: 205 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714 +A + G S F+ + P L+ ++ P+ +Q CIP+ + G D I +++G GKT F + LQ+ +P + A+VL TRELA QI +F+ S +K + GG +++ + L ++ P +V+ TPGR I D LK VR +LDE D++L Sbjct: 74 DALEMGLQDAGESSFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAEDPFGIFAVVLTPTRELALQIYEQFKAISA-PQSMKPVLITGGTDMR-PQALALSQRPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDEADRLL 245
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_KLULA (ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis GN=DBP10 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16 Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 1 Query: 235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 H G F F L +L I GF P+ +Q + IP + D++ A++G GKTA FVL +++ + + + V A++L +RELA Q F+ FS D++ + GG +++ ++ P +V+ TPGR L L + +L LK+V + + DE D++ E Sbjct: 123 HKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGN-PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 284
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_DEBHA (ATP-dependent RNA helicase DBP10 OS=Debaryomyces hansenii GN=DBP10 PE=3 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16 Identity = 60/178 (33.71%), Postives = 94/178 (52.81%), Query Frame = 1 Query: 196 ANGEAAKKGYVGIHSS-GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 AN AKK G S GF FLL I GF+ P+ +Q + IP + DV+ A++G GKTA F L +++ + + + V A++L +RELA Q + + FS D++ V GG +++ ++ N P ++V TPGR L L + +L LK V + + DE D++ E Sbjct: 86 ANNPQAKKAKNGSFPSFGFSKFLLTN-----ISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKG-TDLRSIVLIGGDSLEEQFSSMMTN--PDVIVATPGRFLHLKVEMELELKTVEYIVFDEADRLFE 255
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: Y623_MYCPN (Probable ATP-dependent RNA helicase MG425 homolog OS=Mycoplasma pneumoniae GN=MPN_623 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16 Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP--GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 S F + + P L+ + D+ P+ +Q IPQ + ++I + +G GKTAVF + ++ P G LV+ TRELA QI F F+ + +KV GG+ I L+N+ P+IVVGT GR++ L + +++ H I+DE D ML+ Sbjct: 3 STFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKH-THLKVVSLIGGIPIWQQLKQLENQ-PEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLD 161
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_MANSM (ATP-dependent RNA helicase rhlB OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rhlB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16 Identity = 54/161 (33.54%), Postives = 87/161 (54.04%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVT---ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC-PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L ++L A+ +GFE+ + +Q +P ++ G DV QA++G GKT F+ +T +P + AL++ TRELA QI H+ ER +K A+ YGG K L E I++GT GRI+ + ++L +++ +LDE D+M + Sbjct: 11 FADLPLNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHHLLEHPVKTNHPRALIMAPTRELAVQIAHDAERM-VKTTGLKTALAYGGDG--YDKQLKAIEAGADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADRMFD 168
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_ACTSZ (ATP-dependent RNA helicase rhlB OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rhlB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16 Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL-----QQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L P++L A+ D FE+ + +Q +P + G DV QA++G GKT F+ +T Q + Q AL+L TRELA QI H+ E + +++A+ YGG ++N I++GT GR++ + + +++ +LDE D+M + Sbjct: 11 FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAESLA-QTTKLRIALAYGGDGYDKQLKTIENGV-DILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFD 170
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP9_SCHPO (ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces pombe GN=dbp9 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16 Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTELNPGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F DF L P L RAI FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+ Q + N + AL+L TRELA Q+ + E+ + + I+ + + + LL + P IV+ TP R + L L ++ ++DE D ML Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLL-DLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLML 177
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16 Identity = 64/186 (34.41%), Postives = 91/186 (48.92%), Query Frame = 1 Query: 169 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DKDLS--LKNVRHFILDECDKMLE 717 +AP + T+ G+ A V S F + L L+ G P+ VQ CIP+A+ G DV+ A++G GKTA F L L + +P V AL L TRELA Q+ +F L +A G ++ K L + P +VV TPGRI L D DL+ + +LDE D++L+ Sbjct: 56 EAPAAAVTEHAGDDAAAAAV---PSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARR--PHVVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLD 236 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |