CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH29_ORYSJ (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. japonica GN=Os08g0416100 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 1
Query:  193 KANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKM 711
            K  GE A K      S GF    L  E+ R +   G+  P+ +Q + +P  + G D+   A++G GKTA F++  +Q+   +     + AL+L  TR+LA Q     ++   +  D+K+++  GG +++   + L  E P I++ TPGR++  LA  +DL+L+ V + + DE D +
Sbjct:   35 KREGEGASKRKA--KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFT-DLKISLIVGGDSMESQFEELA-ENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSL 206          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH29_ORYSI (DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa subsp. indica GN=OsI_028228 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 54/176 (30.68%), Postives = 94/176 (53.41%), Query Frame = 1
Query:  193 KANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKM 711
            K  GE A K      S GF    L  E+ R +   G+  P+ +Q + +P  + G D+   A++G GKTA F++  +Q+   +     + AL+L  TR+LA Q     ++   +  D+K+++  GG +++   + L  E P I++ TPGR++  LA  +DL+L+ V + + DE D +
Sbjct:   35 KREGEGASKKKA--KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAAFLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFT-DLKISLIVGGDSMESQFEELA-ENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSL 206          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_ASPTN (ATP-dependent RNA helicase dbp8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  205 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714
            +A + G      S F+   + P L+ ++       P+ +Q  CIP+ + G D I  +++G GKT  F +  LQ+   +P  + A+VL  TRELA QI  +F+  S     +K  +  GG +++  + L  ++ P +V+ TPGR    I     D    LK VR  +LDE D++L
Sbjct:   74 DALEMGLQDAGESSFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAEDPFGIFAVVLTPTRELALQIYEQFKAISA-PQSMKPVLITGGTDMR-PQALALSQRPHVVIATPGRLADHIQTSGEDTVRGLKRVRMVVLDEADRLL 245          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_KLULA (ATP-dependent RNA helicase DBP10 OS=Kluyveromyces lactis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            H  G F  F L   +L  I   GF  P+ +Q + IP  +   D++  A++G GKTA FVL  +++ + +  +  V A++L  +RELA Q    F+ FS    D++  +  GG +++    ++    P +V+ TPGR L L  + +L LK+V + + DE D++ E
Sbjct:  123 HKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFVLPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKG-SDLRSILLTGGDSLEDQFGMMMGN-PDVVIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 284          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_DEBHA (ATP-dependent RNA helicase DBP10 OS=Debaryomyces hansenii GN=DBP10 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 60/178 (33.71%), Postives = 94/178 (52.81%), Query Frame = 1
Query:  196 ANGEAAKKGYVGIHSS-GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            AN   AKK   G   S GF  FLL       I   GF+ P+ +Q + IP  +   DV+  A++G GKTA F L  +++ + +  +  V A++L  +RELA Q   + + FS    D++  V  GG +++     ++ N  P ++V TPGR L L  + +L LK V + + DE D++ E
Sbjct:   86 ANNPQAKKAKNGSFPSFGFSKFLLTN-----ISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKG-TDLRSIVLIGGDSLEEQFSSMMTN--PDVIVATPGRFLHLKVEMELELKTVEYIVFDEADRLFE 255          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: Y623_MYCPN (Probable ATP-dependent RNA helicase MG425 homolog OS=Mycoplasma pneumoniae GN=MPN_623 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP--GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            S F +  + P L+  + D+    P+ +Q   IPQ +   ++I  + +G GKTAVF +  ++     P  G    LV+  TRELA QI   F  F+ +   +KV    GG+ I      L+N+ P+IVVGT GR++ L     +  +++ H I+DE D ML+
Sbjct:    3 STFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVAPTRELAEQIKTTFINFAKH-THLKVVSLIGGIPIWQQLKQLENQ-PEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLMLD 161          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_MANSM (ATP-dependent RNA helicase rhlB OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rhlB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 54/161 (33.54%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVT---ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC-PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L  ++L A+  +GFE+ + +Q   +P ++ G DV  QA++G GKT  F+ +T      +P +     AL++  TRELA QI H+ ER       +K A+ YGG      K L   E    I++GT GRI+   +   ++L +++  +LDE D+M +
Sbjct:   11 FADLPLNAKVLEALESNGFEYCTPIQALSLPISLAGKDVAGQAQTGTGKTMAFLTATFHHLLEHPVKTNHPRALIMAPTRELAVQIAHDAERM-VKTTGLKTALAYGGDG--YDKQLKAIEAGADIIIGTTGRIIDYVKQNIIALSHIQVVVLDEADRMFD 168          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_ACTSZ (ATP-dependent RNA helicase rhlB OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rhlB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL-----QQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L P++L A+ D  FE+ + +Q   +P  + G DV  QA++G GKT  F+ +T       Q +    Q  AL+L  TRELA QI H+ E  +     +++A+ YGG         ++N    I++GT GR++   +   +   +++  +LDE D+M +
Sbjct:   11 FADLPLHPQILAALNDQNFEYCTPIQALSLPLTLQGKDVAGQAQTGTGKTMAFLTATFHHLLTHQPDFITNQPRALILAPTRELAVQIAHDAESLA-QTTKLRIALAYGGDGYDKQLKTIENGV-DILIGTTGRVIDYVKQGIIRFNDIQVVVLDEADRMFD 170          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP9_SCHPO (ATP-dependent RNA helicase dbp9 OS=Schizosaccharomyces pombe GN=dbp9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.109e-16
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------QTELNPGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F DF L P L RAI    FE P+ VQ E IP A+ G D++ QA++G GKTA +++  L+      Q + N   + AL+L  TRELA Q+ +  E+ + +    I+        +  + + LL  + P IV+ TP R +       L L  ++  ++DE D ML
Sbjct:   16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLLL-DLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLML 177          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 64/186 (34.41%), Postives = 91/186 (48.92%), Query Frame = 1
Query:  169 QAPDSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DKDLS--LKNVRHFILDECDKMLE 717
            +AP +  T+  G+ A    V    S F +  L   L+      G   P+ VQ  CIP+A+ G DV+  A++G GKTA F L  L +   +P  V AL L  TRELA Q+  +F      L    +A   G  ++   K L +   P +VV TPGRI  L   D DL+      +  +LDE D++L+
Sbjct:   56 EAPAAAVTEHAGDDAAAAAV---PSTFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPYGVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGGFDSLGQAKGLARR--PHVVVATPGRIATLINDDPDLAKVFARTKFLVLDEADRVLD 236          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH29_ORYSJ2.380e-1630.68DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
RH29_ORYSI2.380e-1630.68DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sa... [more]
DBP8_ASPTN2.380e-1631.61ATP-dependent RNA helicase dbp8 OS=Aspergillus ter... [more]
DBP10_KLULA2.380e-1632.32ATP-dependent RNA helicase DBP10 OS=Kluyveromyces ... [more]
DBP10_DEBHA2.380e-1633.71ATP-dependent RNA helicase DBP10 OS=Debaryomyces h... [more]
Y623_MYCPN3.109e-1633.54Probable ATP-dependent RNA helicase MG425 homolog ... [more]
RHLB_MANSM3.109e-1633.54ATP-dependent RNA helicase rhlB OS=Mannheimia succ... [more]
RHLB_ACTSZ3.109e-1631.48ATP-dependent RNA helicase rhlB OS=Actinobacillus ... [more]
DBP9_SCHPO3.109e-1634.36ATP-dependent RNA helicase dbp9 OS=Schizosaccharom... [more]
RH36_ORYSJ4.060e-1634.41DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
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