CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_YEAST (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae GN=DBP10 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 49/164 (29.88%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            H  G F  F L   +L  I   GF  P+ +Q + IP  +   D++  A++G GKTA F+L  +++ + + G++   A++L  +RELA Q  + F+ F+    +++  +  GG +++    ++    P +++ TPGR L L  + +L LK+V + + DE D++ E
Sbjct:  134 HKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARG-TELRSVLLTGGDSLEEQFGMMMTN-PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 295          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_YEAS7 (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 49/164 (29.88%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            H  G F  F L   +L  I   GF  P+ +Q + IP  +   D++  A++G GKTA F+L  +++ + + G++   A++L  +RELA Q  + F+ F+    +++  +  GG +++    ++    P +++ TPGR L L  + +L LK+V + + DE D++ E
Sbjct:  134 HKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARG-TELRSVLLTGGDSLEEQFGMMMTN-PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 295          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_LODEL (ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  211 AKKGYVGIHSS-GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEL-NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            AKK   G  +S GF  FLL       I   G++ P+ +Q   IP  I   DV+  A++G GKTA FVL  +++ +L +P  V A++L  +RELA Q   + + FS +  +++  V  GG +++     +  + P I+V TPGR L L  +    L +V++ + DE D++ E
Sbjct:  115 AKKAKAGSFASFGFSKFLLAN-----IAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSRELALQTYKQVKEFS-HGTNLQSIVLIGGDSLEEDFGKMMTK-PDIIVCTPGRFLHLKVEMQYDLMSVQYIVFDEADRLFE 278          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESH (ATP-dependent RNA helicase rhlB OS=Shewanella sediminis (strain HAW-EB3) GN=rhlB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 49/164 (29.88%), Postives = 91/164 (55.49%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L+ E+  A+ +SGFE+ + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  + +  + +   +KV + YGG + ++ + +L ++   I++GT GRI+   R   +++  ++  +LDE D+M +
Sbjct:   11 FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKH-TGLKVGIVYGGESYEVQRKVL-DKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX54_DICDI (ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ--TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            + GF+   L   LL+AI+  GF  P+ +Q + IP  + G D++  A++G GKT  FV+  +Q+         V A++L  TRELA Q     + FS     ++  +  GG +++    DL +N  P I++ TPGR++    +  +SL  V++ + DE D++ E
Sbjct:  229 TGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQG-TQLRTILIVGGDSMEDQFTDLARN--PDIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFE 388          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKML 714
            F +  LKP+LL+ +   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L + E        L L  T ELA Q     E+   + P++K+A    G  ++  + + +    QIV+GTPG +L   ++ K +  K ++ F+LDE D M+
Sbjct:   93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKVSE----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 247          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESR (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain MR-7) GN=rhlB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   +SL  ++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESM (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain MR-4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   +SL  ++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_ERWT9 (ATP-dependent RNA helicase rhlB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rhlB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 52/164 (31.71%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P+++ A+   GF + + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL+L  TRELA QI  + E  +  +  +K+ + YGG        +L+N    +++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHPAPEGRQTNQPRALILAPTRELAVQIHADAEPLA-QITGLKLGLAYGGDGYDKQLKVLENGV-DVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: PRP5_LODEL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus GN=PRP5 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 1
Query:  259 LLKPELLRAIV--DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ--QTEL--NPGQ-VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR---ILALARDKDLSLKNVRHFILDECDKMLE 717
            LL PE + +++  D GF  PS +Q + IP  + G D+I  AK+G GKT  +VL  ++  Q +L   PG+    LVL  TRELA QI  E  +FS+ + D+KV   YGG NI+     LK     ++V TPGR   +LA    +  +L+     +LDE D+M +
Sbjct:  392 LLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEGPIGLVLSPTRELALQIEKEILKFSSTM-DLKVCCCYGGSNIENQISELKRGV-NVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFD 552          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP10_YEAST4.060e-1629.88ATP-dependent RNA helicase DBP10 OS=Saccharomyces ... [more]
DBP10_YEAS74.060e-1629.88ATP-dependent RNA helicase DBP10 OS=Saccharomyces ... [more]
DBP10_LODEL4.060e-1633.92ATP-dependent RNA helicase DBP10 OS=Lodderomyces e... [more]
RHLB_SHESH5.303e-1629.88ATP-dependent RNA helicase rhlB OS=Shewanella sedi... [more]
DDX54_DICDI5.303e-1631.90ATP-dependent RNA helicase ddx54 OS=Dictyostelium ... [more]
DD19A_MOUSE5.303e-1633.33ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]
RHLB_SHESR6.926e-1630.49ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RHLB_SHESM6.926e-1630.49ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RHLB_ERWT96.926e-1631.71ATP-dependent RNA helicase rhlB OS=Erwinia tasmani... [more]
PRP5_LODEL6.926e-1638.65Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
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