CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_YEAST (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae GN=DBP10 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16 Identity = 49/164 (29.88%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 H G F F L +L I GF P+ +Q + IP + D++ A++G GKTA F+L +++ + + G++ A++L +RELA Q + F+ F+ +++ + GG +++ ++ P +++ TPGR L L + +L LK+V + + DE D++ E Sbjct: 134 HKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARG-TELRSVLLTGGDSLEEQFGMMMTN-PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 295
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_YEAS7 (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP10 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16 Identity = 49/164 (29.88%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 H G F F L +L I GF P+ +Q + IP + D++ A++G GKTA F+L +++ + + G++ A++L +RELA Q + F+ F+ +++ + GG +++ ++ P +++ TPGR L L + +L LK+V + + DE D++ E Sbjct: 134 HKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARG-TELRSVLLTGGDSLEEQFGMMMTN-PDVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLFE 295
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_LODEL (ATP-dependent RNA helicase DBP10 OS=Lodderomyces elongisporus GN=DBP10 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16 Identity = 58/171 (33.92%), Postives = 93/171 (54.39%), Query Frame = 1 Query: 211 AKKGYVGIHSS-GFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEL-NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 AKK G +S GF FLL I G++ P+ +Q IP I DV+ A++G GKTA FVL +++ +L +P V A++L +RELA Q + + FS + +++ V GG +++ + + P I+V TPGR L L + L +V++ + DE D++ E Sbjct: 115 AKKAKAGSFASFGFSKFLLAN-----IAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAFVLPLIEKLKLRSPSGVRAVILSPSRELALQTYKQVKEFS-HGTNLQSIVLIGGDSLEEDFGKMMTK-PDIIVCTPGRFLHLKVEMQYDLMSVQYIVFDEADRLFE 278
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESH (ATP-dependent RNA helicase rhlB OS=Shewanella sediminis (strain HAW-EB3) GN=rhlB PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16 Identity = 49/164 (29.88%), Postives = 91/164 (55.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L+ E+ A+ +SGFE+ + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + + +KV + YGG + ++ + +L ++ I++GT GRI+ R +++ ++ +LDE D+M + Sbjct: 11 FADFSLQTEIKTALNESGFEYCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFNHLLTTPIPEGRQLNQPRAIIMAPTRELAIQIAKDADLLAKH-TGLKVGIVYGGESYEVQRKVL-DKGVDILIGTTGRIIDYVRQGIINVSAIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX54_DICDI (ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16 Identity = 52/163 (31.90%), Postives = 88/163 (53.99%), Query Frame = 1 Query: 238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ--TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 + GF+ L LL+AI+ GF P+ +Q + IP + G D++ A++G GKT FV+ +Q+ V A++L TRELA Q + FS ++ + GG +++ DL +N P I++ TPGR++ + +SL V++ + DE D++ E Sbjct: 229 TGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQG-TQLRTILIVGGDSMEDQFTDLARN--PDIIIATPGRLMHHLLETGMSLSKVQYIVFDEADRLFE 388
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16 Identity = 53/159 (33.33%), Postives = 86/159 (54.09%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKML 714 F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L + E L L T ELA Q E+ + P++K+A G ++ + + + QIV+GTPG +L ++ K + K ++ F+LDE D M+ Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKVSE----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 247
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESR (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain MR-7) GN=rhlB PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R +SL ++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESM (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain MR-4) GN=rhlB PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R +SL ++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_ERWT9 (ATP-dependent RNA helicase rhlB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rhlB PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 52/164 (31.71%), Postives = 87/164 (53.05%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P+++ A+ GF + + +Q +P + G DV QA++G GKT F+ ST +P Q AL+L TRELA QI + E + + +K+ + YGG +L+N +++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHPAPEGRQTNQPRALILAPTRELAVQIHADAEPLA-QITGLKLGLAYGGDGYDKQLKVLENGV-DVLIGTTGRLIDYAKQNHVNLGAIQVVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: PRP5_LODEL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus GN=PRP5 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 63/163 (38.65%), Postives = 91/163 (55.83%), Query Frame = 1 Query: 259 LLKPELLRAIV--DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ--QTEL--NPGQ-VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR---ILALARDKDLSLKNVRHFILDECDKMLE 717 LL PE + +++ D GF PS +Q + IP + G D+I AK+G GKT +VL ++ Q +L PG+ LVL TRELA QI E +FS+ + D+KV YGG NI+ LK ++V TPGR +LA + +L+ +LDE D+M + Sbjct: 392 LLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEGPIGLVLSPTRELALQIEKEILKFSSTM-DLKVCCCYGGSNIENQISELKRGV-NVIVATPGRLIDLLAANGGRITTLRRTTFVVLDEADRMFD 552 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |