CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX49_DROME (Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster GN=Dbp45A PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 1
Query:  262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKML 714
            L+P L++ +   G +  + +Q +CIP  + G D I  AK+G GKT  F L  L++    P    ALVL  T ELAYQI  +F   +     ++V V  GG +  +    L    P IVV  PGR+   L      S  N+++ ++DE D+ML
Sbjct:   14 LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISEQF-LVAGQAMGVRVCVVSGGTDQMVESQKLMQR-PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRML 163          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLE 717
            F +  LK ELL+ I   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L +          L L  T ELA Q     ER   +  D++V     G  I    D+ K    QIV+GTPG +L    + K + L  +R F+LDE D M++
Sbjct:   99 FEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTDVTK----QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMID 254          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLE 717
            F +  LK ELL+ I   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L +          L L  T ELA Q     ER   +  D++V     G  I    D+ K    QIV+GTPG +L    + K + L  +R F+LDE D M++
Sbjct:   99 FEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNRIPRGTDVTK----QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMID 254          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 50/158 (31.65%), Postives = 84/158 (53.16%), Query Frame = 1
Query:  241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            S F+++ +  ++LRA+   G+  P++VQ   IP A+   D++ ++++G GKTA F +   +    +  +  AL+L  TRELA Q+  +      +   IK    +G  +    K  LK +   IVVGTPGR+L       L L  + + ++DE D+ML
Sbjct:    2 SHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRF-KRIKATAVFGKSSFDKQKAELKQK-SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEML 157          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = 1
Query:  166 AQAPDSVATKANGEAAKKGY-VGIHS--SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714
            A+ PD  A + +   AK  + +G+ S  S F    L P L+ ++       P+ +Q  CIP+ + G D I  +++G GKT  F    L +   +P  + A+VL  TRELA QI  +F+  S     +K  +  GG  ++     L    P +V+ TPGR    I    +D    L  VR  +LDE D++L
Sbjct:   78 AKGPDRNADQPDPVTAKDAFAMGLQSMDSSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISA-PQSLKPVLITGGSEMRPQAIALSTR-PHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLL 265          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_ASHGO (ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii GN=DBP8 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 55/163 (33.74%), Postives = 83/163 (50.92%), Query Frame = 1
Query:  238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714
            +S F+D  +   L  A+       P+ +Q  CIP+ + G D I  AK+G GKT  F    L +   +P  +  +VL  TRELA QI  +F    + + +I+VA+  GG +I + + L     P  ++ TPGR    I+    D    LK VR+ +LDE D +L
Sbjct:    5 NSTFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPMLTKWSADPCGMFGIVLTPTRELAMQIAEQFTALGSVM-NIRVALVVGGEDI-VSQALELQRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILL 165          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   + L +++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   + L +++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   + L +++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB2 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS223) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   + L +++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX49_DROME6.926e-1634.87Probable ATP-dependent RNA helicase Dbp45A OS=Dros... [more]
DDX25_RAT6.926e-1635.63ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DDX25_BOVIN6.926e-1635.63ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DBPA_BACSU6.926e-1631.65ATP-dependent RNA helicase dbpA OS=Bacillus subtil... [more]
DBP8_COCIM6.926e-1631.58ATP-dependent RNA helicase DBP8 OS=Coccidioides im... [more]
DBP8_ASHGO6.926e-1633.74ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii... [more]
RHLB_SHEB99.046e-1629.88ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB89.046e-1629.88ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB59.046e-1629.88ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]
RHLB_SHEB29.046e-1629.88ATP-dependent RNA helicase rhlB OS=Shewanella balt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
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