CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX49_DROME (Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster GN=Dbp45A PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 53/152 (34.87%), Postives = 78/152 (51.32%), Query Frame = 1 Query: 262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKML 714 L+P L++ + G + + +Q +CIP + G D I AK+G GKT F L L++ P ALVL T ELAYQI +F + ++V V GG + + L P IVV PGR+ L S N+++ ++DE D+ML Sbjct: 14 LRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISEQF-LVAGQAMGVRVCVVSGGTDQMVESQKLMQR-PHIVVAMPGRLADHLTGCDTFSFDNLKYLVVDEADRML 163
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLE 717 F + LK ELL+ I GF PS++Q +P + ++I Q++SG GKTA FVL+ L + L L T ELA Q ER + D++V G I D+ K QIV+GTPG +L + K + L +R F+LDE D M++ Sbjct: 99 FEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLNRVNALELFPQCLCLAPTYELALQTGRVVERMGKFCVDVEVMYAIRGNRIPRGTDVTK----QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMID 254
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLE 717 F + LK ELL+ I GF PS++Q +P + ++I Q++SG GKTA FVL+ L + L L T ELA Q ER + D++V G I D+ K QIV+GTPG +L + K + L +R F+LDE D M++ Sbjct: 99 FEELRLKEELLKGIYAMGFNRPSKIQEMALPMMLAHPPQNLIAQSQSGTGKTAAFVLAMLSRVNALKLFPQCLCLAPTYELALQTGRVVERMGKFCVDVQVMYAIRGNRIPRGTDVTK----QIVIGTPGTVLDWCFKRKLIDLTKIRVFVLDEADVMID 254
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 50/158 (31.65%), Postives = 84/158 (53.16%), Query Frame = 1 Query: 241 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 S F+++ + ++LRA+ G+ P++VQ IP A+ D++ ++++G GKTA F + + + + AL+L TRELA Q+ + + IK +G + K LK + IVVGTPGR+L L L + + ++DE D+ML Sbjct: 2 SHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCELANWDENKPQALILTPTRELAVQVKEDITNIGRF-KRIKATAVFGKSSFDKQKAELKQK-SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEML 157
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_COCIM (ATP-dependent RNA helicase DBP8 OS=Coccidioides immitis GN=DBP8 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = 1 Query: 166 AQAPDSVATKANGEAAKKGY-VGIHS--SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714 A+ PD A + + AK + +G+ S S F L P L+ ++ P+ +Q CIP+ + G D I +++G GKT F L + +P + A+VL TRELA QI +F+ S +K + GG ++ L P +V+ TPGR I +D L VR +LDE D++L Sbjct: 78 AKGPDRNADQPDPVTAKDAFAMGLQSMDSSFSSLGLAPWLVGSLSAMAIRRPTAIQRACIPEILKGRDCIGGSRTGSGKTVAFAAPILHRWSEDPFGIFAVVLTPTRELALQIFEQFKAISA-PQSLKPVLITGGSEMRPQAIALSTR-PHVVIATPGRLADHIKTSGQDTIYGLNRVRMVVLDEADRLL 265
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_ASHGO (ATP-dependent RNA helicase DBP8 OS=Ashbya gossypii GN=DBP8 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16 Identity = 55/163 (33.74%), Postives = 83/163 (50.92%), Query Frame = 1 Query: 238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714 +S F+D + L A+ P+ +Q CIP+ + G D I AK+G GKT F L + +P + +VL TRELA QI +F + + +I+VA+ GG +I + + L P ++ TPGR I+ D LK VR+ +LDE D +L Sbjct: 5 NSTFKDLGVAKWLAEALNSMKITQPTTIQKACIPEILAGRDCIGGAKTGSGKTIAFAAPMLTKWSADPCGMFGIVLTPTRELAMQIAEQFTALGSVM-NIRVALVVGGEDI-VSQALELQRKPHFIIATPGRLAHHIMHSGEDTIGGLKRVRYLVLDEADILL 165
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB9 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS195) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R + L +++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB8 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS185) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R + L +++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB5 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R + L +++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEB2 (ATP-dependent RNA helicase rhlB OS=Shewanella baltica (strain OS223) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 49/164 (29.88%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R + L +++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPEGRLINQPRAIIMAPTRELAIQIAKDAILLAKH-THLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIIGLNSIQAVVLDEADRMFD 172 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |