CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 55/164 (33.54%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P +L A+   GF+H + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S     +K+ + YGG        +L++    I+VGT GR++  A+   + L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALS-QSTGLKMGLAYGGDGYDKQLKVLESGV-DILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 56/161 (34.78%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTA----------LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            L   L  ++   G  H   +Q   +  A+ G D+I +AK+G GKT  F +  +++     G  TA          LVL  TRELA Q+  E +  + YL  + V   YGGV+  I +  L      +VVGTPGRI+ L   + L L  V + +LDE D+ML
Sbjct:  109 LPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCV---YGGVSYTIQQSALTRGV-DVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = 1
Query:  262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714
            +KP L+ ++     + P+ +Q  CIP+ + G D I  +++G GKT  F +  LQ+   +P  + ALVL  TRELA QI  +F+  S+    +K  +  GG +++     L    P +V+ TPGR    I     D   +L+ VR  +LDE D++L
Sbjct:  118 VKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQR-PHVVIATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLL 270          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 51/160 (31.87%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD----LSLKNVRHFILDECDKML 714
            F D  + P L+  +       P+++Q   I Q + G + I  AK+G GKTA F L  +++   +P  + AL+L  TRELA QI  +F      L ++K A+  GG+++ I + +  ++ P +VV TPGR+  L R         L+ ++  ++DE D++L
Sbjct:    9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL-NLKHALIVGGMDM-IRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL 166          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL---SLKNVRHFILDECDKML 714
            F    L   L+ A+     + P+E+Q  C+   + G D I  AK+G GKT  F L  +++   +P  V A+VL  TRELAYQ+  +F      L  +  A   GG+++      L+   P I+V TPGR+  L R   +    L  VR  +LDE D+ML
Sbjct:  154 FESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPL-GLTTATIVGGMDMMKQAQELEAR-PHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVLDEADRML 310          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 1
Query:  178 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT-----ELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            +++  K  G    +      S+  RD ++       +  SG++ P+ +Q   IP    G D++  A++G GKTA F+L  L +      EL  G+   +++  TRELA QI +E  +F+ +   +K+ + YGG + +   + +   C  +V+ TPGR+L       ++ ++ R  +LDE D+ML+
Sbjct:  229 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDN-----VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA-FESYLKIGIVYGGTSFRHQNECITRGC-HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 406          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SPB4_ASHGO (ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii GN=SPB4 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 55/169 (32.54%), Postives = 84/169 (49.70%), Query Frame = 1
Query:  253 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ--------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPD----IKVAVFYGGVNIKIHKDL--LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            D+ L+P +  A+   G+E  + VQ   IP      DV+ ++ +G GKT  FV+  L++        ++L  G    +++  TRELA QI    E F TY PD    IK  +  G     +  D+       PQI+VGTPGR+L   +  ++   +    ILDE DK+L+
Sbjct:   11 DYTLQPWIRTAVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPVLERVIQDDANSSKLKKGHFHTIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQILVGTPGRLLDFLKMPNIKTSSCGAAILDEADKLLD 179          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   +SL  ++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKH-TRLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + + +L ++   I++GT GRI+   R   +SL  ++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKH-TRLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 54/157 (34.39%), Postives = 84/157 (53.50%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE-CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            F D  +  ++LR + D G++ PSE+Q   +   + G DVI QA+SG GKT++  +S  Q   ++  +V  LVL  +RELA Q     +    +  +I+     GG +  I +D+ K E     V GTPGR+  + +   L  K V+  +LDE D+ML
Sbjct:   24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH-TNIQAHACIGGKS--IGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEML 177          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_SERP59.046e-1633.54ATP-dependent RNA helicase rhlB OS=Serratia protea... [more]
RH3_ARATH9.046e-1634.78DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
DBP8_SCLS19.046e-1633.55ATP-dependent RNA helicase dbp8 OS=Sclerotinia scl... [more]
DBP8_SCHPO9.046e-1631.88ATP-dependent RNA helicase dbp8 OS=Schizosaccharom... [more]
DBP8_CRYNE9.046e-1634.59ATP-dependent RNA helicase DBP8 OS=Cryptococcus ne... [more]
VASA_DROME1.181e-1528.11ATP-dependent RNA helicase vasa OS=Drosophila mela... [more]
SPB4_ASHGO1.181e-1532.54ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypi... [more]
RHLB_SHESW1.181e-1530.49ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RHLB_SHEPC1.181e-1530.49ATP-dependent RNA helicase rhlB OS=Shewanella putr... [more]
RH34_ARATH1.181e-1534.39DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
back to top