CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 55/164 (33.54%), Postives = 85/164 (51.83%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P +L A+ GF+H + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S +K+ + YGG +L++ I+VGT GR++ A+ + L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRALIMAPTRELAVQIHSDAEALS-QSTGLKMGLAYGGDGYDKQLKVLESGV-DILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 56/161 (34.78%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTA----------LVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 L L ++ G H +Q + A+ G D+I +AK+G GKT F + +++ G TA LVL TRELA Q+ E + + YL + V YGGV+ I + L +VVGTPGRI+ L + L L V + +LDE D+ML Sbjct: 109 LPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCV---YGGVSYTIQQSALTRGV-DVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQML 265
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_SCLS1 (ATP-dependent RNA helicase dbp8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp8 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 52/155 (33.55%), Postives = 83/155 (53.55%), Query Frame = 1 Query: 262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714 +KP L+ ++ + P+ +Q CIP+ + G D I +++G GKT F + LQ+ +P + ALVL TRELA QI +F+ S+ +K + GG +++ L P +V+ TPGR I D +L+ VR +LDE D++L Sbjct: 118 VKPWLVASLGAMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQR-PHVVIATPGRLADHIRTSGEDTVCALRRVRMVVLDEADRLL 270
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_SCHPO (ATP-dependent RNA helicase dbp8 OS=Schizosaccharomyces pombe GN=dbp8 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 51/160 (31.87%), Postives = 86/160 (53.75%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD----LSLKNVRHFILDECDKML 714 F D + P L+ + P+++Q I Q + G + I AK+G GKTA F L +++ +P + AL+L TRELA QI +F L ++K A+ GG+++ I + + ++ P +VV TPGR+ L R L+ ++ ++DE D++L Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANL-NLKHALIVGGMDM-IRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLL 166
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16 Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL---SLKNVRHFILDECDKML 714 F L L+ A+ + P+E+Q C+ + G D I AK+G GKT F L +++ +P V A+VL TRELAYQ+ +F L + A GG+++ L+ P I+V TPGR+ L R + L VR +LDE D+ML Sbjct: 154 FESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPL-GLTTATIVGGMDMMKQAQELEAR-PHIIVATPGRLCDLLRSGGVGPGKLSRVRTLVLDEADRML 310
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 52/185 (28.11%), Postives = 95/185 (51.35%), Query Frame = 1 Query: 178 DSVATKANGEAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQT-----ELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 +++ K G + S+ RD ++ + SG++ P+ +Q IP G D++ A++G GKTA F+L L + EL G+ +++ TRELA QI +E +F+ + +K+ + YGG + + + + C +V+ TPGR+L ++ ++ R +LDE D+ML+ Sbjct: 229 NNIPVKVTGSDVPQPIQHFTSADLRDIIIDN-----VNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA-FESYLKIGIVYGGTSFRHQNECITRGC-HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD 406
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: SPB4_ASHGO (ATP-dependent rRNA helicase SPB4 OS=Ashbya gossypii GN=SPB4 PE=3 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 55/169 (32.54%), Postives = 84/169 (49.70%), Query Frame = 1 Query: 253 DFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ--------TELNPGQVTALVLCHTRELAYQICHEFERFSTYLPD----IKVAVFYGGVNIKIHKDL--LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 D+ L+P + A+ G+E + VQ IP DV+ ++ +G GKT FV+ L++ ++L G +++ TRELA QI E F TY PD IK + G + D+ PQI+VGTPGR+L + ++ + ILDE DK+L+ Sbjct: 11 DYTLQPWIRTAVDAMGYETMTPVQASTIPLFARNKDVVVESVTGSGKTVAFVIPVLERVIQDDANSSKLKKGHFHTIIISPTRELASQIQGVIEAFLTYYPDGEYPIKSQLLIGSNTSSVRDDVAAFLEHRPQILVGTPGRLLDFLKMPNIKTSSCGAAILDEADKLLD 179
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESW (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain W3-18-1) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R +SL ++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKH-TRLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPC (ATP-dependent RNA helicase rhlB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + +L ++ I++GT GRI+ R +SL ++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPIPEGRQINQPRAIIMAPTRELAIQIAKDAILLAKH-TRLKVGIVYGGESYDVQRKVL-DQGVDILIGTTGRIIDYVRQGIISLTAIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 54/157 (34.39%), Postives = 84/157 (53.50%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE-CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D + ++LR + D G++ PSE+Q + + G DVI QA+SG GKT++ +S Q ++ +V LVL +RELA Q + + +I+ GG + I +D+ K E V GTPGR+ + + L K V+ +LDE D+ML Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH-TNIQAHACIGGKS--IGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEML 177 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |