CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH25_ARATH (DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis thaliana GN=RH25 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 57/182 (31.32%), Postives = 86/182 (47.25%), Query Frame = 1 Query: 205 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP--------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI---LALARDKDLSLKNVRHFILDECDKMLE 717 + AK + + F F L P L+ I D+GF+ + VQ +P + G D++ +AK+G GKT F+L +++ P + LV+C TRELA Q E Y P I V V GG + + L+ QI+V TPGR+ + L V+ +LDE D +L+ Sbjct: 68 QIAKTSDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLD 249
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 1 Query: 274 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 L++ I+ +GF +P+ +Q + P A+ G D+I AK+G GKT F+L ++ P G + LVL TRELA QI E +F I YGG + LK +IV+ TPGR++ + +L+ V + +LDE D+ML+ Sbjct: 395 LMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPI-VLVLAPTRELALQIQEETNKFGG-TSQISNTCVYGGASKHTQVAALKKGV-EIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLD 545
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKML 714 F + LKP+LL+ + GF PS++Q +P + ++I Q++SG GKTA FVL+ L + E L L T ELA Q E+ + P++K+A G ++ + + ++ IV+GTPG +L ++ K + K ++ F+LDE D M+ Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKISEH----IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 247
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP9_CRYNE (ATP-dependent RNA helicase DBP9 OS=Cryptococcus neoformans GN=DBP9 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 1 Query: 259 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ-----QTELNPGQ-----VTALVLCHTRELAYQICHEFERFSTYLPDIK--VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 L+ +L A+ D F HP+ VQ + IP + G DV+ +A++G GKTA +++ +Q + +L+P A++L T+ELA Q+ + + Y + V V GG +I + +L N+ P IV+ TP ++L+L + K LSL + +DE D +L Sbjct: 27 LIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVPAVQKILEAKADLSPASAEYQATRAIILVPTKELALQVSSFTKNVTKYCDGLVQCVDVAAGGASI---QRVLLNDKPDIVISTPTKLLSLLQSKSLSLSQLSFLAIDEADLLL 187
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714 FR L L+ ++ P+ +Q CIP+ + G D I AK+G GKT F L Q +P + +VL TRELA QI +F +Y+ +I+VA+ GG +I + + L P ++ TPGR IL D LK V++ +LDE D +L Sbjct: 11 FRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLTQWSEDPTGMFGIVLTPTRELAMQIAEQFTALGSYM-NIRVALVVGGESI-VDQALQLQRKPHFIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEADILL 168
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 1 Query: 262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714 +KP L+ ++ + P+ +Q CIP+ + G D I +++G GKT F + LQ+ +P + ALVL TRELA QI +F+ S+ +K + GG +++ L P IV+ TPGR I D +L+ VR +LDE D++L Sbjct: 123 VKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQR-PHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDEADRLL 275
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP3_USTMA (ATP-dependent RNA helicase DBP3 OS=Ustilago maydis GN=DBP3 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 56/159 (35.22%), Postives = 79/159 (49.69%), Query Frame = 1 Query: 280 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------------QTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 + + GF P+ +Q C P + DV+ A++G GKT F L LQ + + QV LV+ TRELA Q + + I + YGGV+ + LL P +IVVGTPGR+L +ARD L L V + +LDE D+ML+ Sbjct: 172 KTLDSQGFSTPTPIQACCWPVLLQNKDVVGIAETGSGKTFAFGLPALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELAIQTEENMAKLGKSM-GIGMICLYGGVSKQEQVRLLNQSPPVRIVVGTPGRVLDMARDGSLDLSGVTYLVLDEADRMLD 329
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15 Identity = 52/166 (31.33%), Postives = 90/166 (54.22%), Query Frame = 1 Query: 235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFS--TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 H G F F L +L I GF P+ +Q + IP + D++ A++G GKTA FVL +++ + + ++ A++L +RELA Q F+ FS T+L + + GG +++ ++ P +++ TPGR L L + +L LK+V + + DE D++ E Sbjct: 112 HKKGSFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSV---LLTGGDSLEDQFGMMMTN-PDVIIATPGRFLHLKVEMNLDLKSVEYAVFDEADRLFE 273
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: YFML_BACSU (Putative ATP-dependent RNA helicase yfmL OS=Bacillus subtilis GN=yfmL PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15 Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 1 Query: 295 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 SGF+ P+ VQ + + G DVI ++ +G GKT + L L++ + A++L +REL QI + + +++ A GG N+K + LK P I+VGTPGR+ L + K L + V+ +LDE D+++ Sbjct: 22 SGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAG-SELRAASLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15 Identity = 54/165 (32.73%), Postives = 91/165 (55.15%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVT-------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLE 717 F F L P LL + +GF + +Q +P A+ G D+ QA++G GKT F++ + + +PG V AL+L TRELA QI ++ +F L ++ A+ YGGV+ +++L+ +V+ TPGR++ L + + +SL+ +LDE D+M + Sbjct: 11 FSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNL-GLRFALIYGGVDYDRQREMLRKGA-DVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFD 173 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |