CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH25_ARATH (DEAD-box ATP-dependent RNA helicase 25 OS=Arabidopsis thaliana GN=RH25 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 57/182 (31.32%), Postives = 86/182 (47.25%), Query Frame = 1
Query:  205 EAAKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP--------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRI---LALARDKDLSLKNVRHFILDECDKMLE 717
            + AK     +  + F  F L P  L+ I D+GF+  + VQ   +P  + G D++ +AK+G GKT  F+L +++     P          +  LV+C TRELA Q   E      Y P I V V  GG  +   +  L+    QI+V TPGR+   +         L  V+  +LDE D +L+
Sbjct:   68 QIAKTSDSYLSKTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLD 249          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 1
Query:  274 LLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            L++ I+ +GF +P+ +Q +  P A+ G D+I  AK+G GKT  F+L ++      P      G +  LVL  TRELA QI  E  +F      I     YGG +       LK    +IV+ TPGR++ +      +L+ V + +LDE D+ML+
Sbjct:  395 LMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPI-VLVLAPTRELALQIQEETNKFGG-TSQISNTCVYGGASKHTQVAALKKGV-EIVIATPGRLIDILESGKTNLRRVTYLVLDEADRMLD 545          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILA-LARDKDLSLKNVRHFILDECDKML 714
            F +  LKP+LL+ +   GF  PS++Q   +P  +     ++I Q++SG GKTA FVL+ L + E        L L  T ELA Q     E+   + P++K+A    G  ++  + + ++    IV+GTPG +L   ++ K +  K ++ F+LDE D M+
Sbjct:   93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPAERYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKISEH----IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 247          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP9_CRYNE (ATP-dependent RNA helicase DBP9 OS=Cryptococcus neoformans GN=DBP9 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  259 LLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ-----QTELNPGQ-----VTALVLCHTRELAYQICHEFERFSTYLPDIK--VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            L+   +L A+ D  F HP+ VQ + IP  + G DV+ +A++G GKTA +++  +Q     + +L+P         A++L  T+ELA Q+    +  + Y   +   V V  GG +I   + +L N+ P IV+ TP ++L+L + K LSL  +    +DE D +L
Sbjct:   27 LIDSRVLVALADQKFAHPTLVQAKAIPLLLEGKDVLARARTGSGKTAAYIVPAVQKILEAKADLSPASAEYQATRAIILVPTKELALQVSSFTKNVTKYCDGLVQCVDVAAGGASI---QRVLLNDKPDIVISTPTKLLSLLQSKSLSLSQLSFLAIDEADLLL 187          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714
            FR   L   L+ ++       P+ +Q  CIP+ + G D I  AK+G GKT  F    L Q   +P  +  +VL  TRELA QI  +F    +Y+ +I+VA+  GG +I + + L     P  ++ TPGR    IL    D    LK V++ +LDE D +L
Sbjct:   11 FRQLGLSKWLVESLDAMRIRTPTAIQSGCIPEILKGRDCIGGAKTGSGKTIAFAGPMLTQWSEDPTGMFGIVLTPTRELAMQIAEQFTALGSYM-NIRVALVVGGESI-VDQALQLQRKPHFIIATPGRLAHHILNSGDDTVGGLKRVKYLVLDEADILL 168          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP8_BOTFB (ATP-dependent RNA helicase dbp8 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 1
Query:  262 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGR----ILALARDKDLSLKNVRHFILDECDKML 714
            +KP L+ ++     + P+ +Q  CIP+ + G D I  +++G GKT  F +  LQ+   +P  + ALVL  TRELA QI  +F+  S+    +K  +  GG +++     L    P IV+ TPGR    I     D   +L+ VR  +LDE D++L
Sbjct:  123 VKPWLVGSLGSMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQKWAEDPFGIFALVLTPTRELALQIYEQFKAISS-PQSLKAVLITGGSDMRPQATALAQR-PHIVIATPGRLADHIRTSGEDTIGALRRVRMVVLDEADRLL 275          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP3_USTMA (ATP-dependent RNA helicase DBP3 OS=Ustilago maydis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 56/159 (35.22%), Postives = 79/159 (49.69%), Query Frame = 1
Query:  280 RAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQ------------QTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            + +   GF  P+ +Q  C P  +   DV+  A++G GKT  F L  LQ            + +    QV  LV+  TRELA Q      +    +  I +   YGGV+ +    LL    P +IVVGTPGR+L +ARD  L L  V + +LDE D+ML+
Sbjct:  172 KTLDSQGFSTPTPIQACCWPVLLQNKDVVGIAETGSGKTFAFGLPALQHLVTKHKVLDSGKKKAKGAQVNVLVIAPTRELAIQTEENMAKLGKSM-GIGMICLYGGVSKQEQVRLLNQSPPVRIVVGTPGRVLDMARDGSLDLSGVTYLVLDEADRMLD 329          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DBP10_CANGA (ATP-dependent RNA helicase DBP10 OS=Candida glabrata GN=DBP10 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 52/166 (31.33%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  235 HSSG-FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQV--TALVLCHTRELAYQICHEFERFS--TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            H  G F  F L   +L  I   GF  P+ +Q + IP  +   D++  A++G GKTA FVL  +++ + +  ++   A++L  +RELA Q    F+ FS  T+L  +   +  GG +++    ++    P +++ TPGR L L  + +L LK+V + + DE D++ E
Sbjct:  112 HKKGSFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAAFVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSV---LLTGGDSLEDQFGMMMTN-PDVIIATPGRFLHLKVEMNLDLKSVEYAVFDEADRLFE 273          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: YFML_BACSU (Putative ATP-dependent RNA helicase yfmL OS=Bacillus subtilis GN=yfmL PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  295 SGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714
            SGF+ P+ VQ +     + G DVI ++ +G GKT  + L  L++ +       A++L  +REL  QI    + +     +++ A   GG N+K   + LK   P I+VGTPGR+  L + K L +  V+  +LDE D+++
Sbjct:   22 SGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHPQAVILAPSRELVMQIFQVIQDWKAG-SELRAASLIGGANVKKQVEKLKKH-PHIIVGTPGRVFELIKAKKLKMHEVKTIVLDETDQLV 159          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 54/165 (32.73%), Postives = 91/165 (55.15%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVT-------ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLE 717
            F  F L P LL  +  +GF   + +Q   +P A+ G D+  QA++G GKT  F++  + +   +PG V        AL+L  TRELA QI ++  +F   L  ++ A+ YGGV+    +++L+     +V+ TPGR++  L + + +SL+     +LDE D+M +
Sbjct:   11 FSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQIYNDAVKFGGNL-GLRFALIYGGVDYDRQREMLRKGA-DVVIATPGRLIDYLKQHEVVSLRVCEICVLDEADRMFD 173          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH25_ARATH1.181e-1531.32DEAD-box ATP-dependent RNA helicase 25 OS=Arabidop... [more]
DDX17_DICDI1.181e-1534.42Probable ATP-dependent RNA helicase ddx17 OS=Dicty... [more]
DD19A_BOVIN1.181e-1532.70ATP-dependent RNA helicase DDX19A OS=Bos taurus GN... [more]
DBP9_CRYNE1.181e-1532.32ATP-dependent RNA helicase DBP9 OS=Cryptococcus ne... [more]
DBP8_CANGA1.181e-1535.00ATP-dependent RNA helicase DBP8 OS=Candida glabrat... [more]
DBP8_BOTFB1.181e-1534.19ATP-dependent RNA helicase dbp8 OS=Botryotinia fuc... [more]
DBP3_USTMA1.181e-1535.22ATP-dependent RNA helicase DBP3 OS=Ustilago maydis... [more]
DBP10_CANGA1.181e-1531.33ATP-dependent RNA helicase DBP10 OS=Candida glabra... [more]
YFML_BACSU1.543e-1532.86Putative ATP-dependent RNA helicase yfmL OS=Bacill... [more]
RHLB_XYLFT1.543e-1532.73ATP-dependent RNA helicase rhlB OS=Xylella fastidi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
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