CN185369

Overview
NameCN185369
Unique NameCN185369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPS (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P ++ A+ + GF++ + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S  +  +K+ + YGG        +L++    I++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPP (ATP-dependent RNA helicase rhlB OS=Yersinia pestis (strain Pestoides F) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P ++ A+ + GF++ + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S  +  +K+ + YGG        +L++    I++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPN (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P ++ A+ + GF++ + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S  +  +K+ + YGG        +L++    I++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPE (ATP-dependent RNA helicase rhlB OS=Yersinia pestis GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P ++ A+ + GF++ + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S  +  +K+ + YGG        +L++    I++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPB (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P ++ A+ + GF++ + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S  +  +K+ + YGG        +L++    I++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPA (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P ++ A+ + GF++ + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S  +  +K+ + YGG        +L++    I++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERP3 (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F DF L P ++ A+ + GF++ + +Q   +P  + G DV  QA++G GKT  F+ ST      +P        Q  AL++  TRELA QI  + E  S  +  +K+ + YGG        +L++    I++GT GR++  A+   ++L  ++  +LDE D+M +
Sbjct:   11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESA (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain ANA-3) GN=rhlB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 49/164 (29.88%), Postives = 87/164 (53.05%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            F D  L PE+ +A+ ++GFE  + +Q   +P  +   D+  QA++G GKT  F+++T       P        Q  A+++  TRELA QI  +    + +   +KV + YGG +  + +  L ++   I++GT GRI+   R   ++L  ++  +LDE D+M +
Sbjct:   11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKH-SHLKVGIVYGGESYDVQRKTL-DQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFD 172          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 57/177 (32.20%), Postives = 94/177 (53.11%), Query Frame = 1
Query:  238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL--------------QQTELN--PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            + GF    L   +LR +   G+E P+ VQ   +P A+ G D++  A++G GKTA F L  +              +++  N    +  ALVL  TRELA QI  E ++FS +   ++V V YGG  +    +DL +     I+V TPGR++ +     +SL+ +++ ++DE D+ML+
Sbjct:   83 ADGFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKKFS-FQTGLRVVVAYGGTPMYNQLRDLERG--ADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLD 256          
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL----QQTELNPGQ-VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717
            FRD      +L+ I  +GF  P+ +Q +  P A+ G D+I  A++G GKT  ++L  +     Q  L PG     LVL  TRELA QI  E  +F      IK    YGGV      +DL K    +IV+ TPGR++ +      +L+ V + +LDE D+ML+
Sbjct:   93 FRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGA-SSKIKSTCIYGGVPKGPQVRDLQKG--VEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLD 252          
The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_YERPS2.632e-1531.71ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPP2.632e-1531.71ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPN2.632e-1531.71ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPE2.632e-1531.71ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPB2.632e-1531.71ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPA2.632e-1531.71ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERP32.632e-1531.71ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_SHESA2.632e-1529.88ATP-dependent RNA helicase rhlB OS=Shewanella sp. ... [more]
RH52A_ORYSJ2.632e-1532.20DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
RH20_ORYSJ2.632e-1536.20DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bp
ATGATCTTTTTCTCCTTTTATTTTGGCTAATTATTTTCATTTGCAGCACT
CTCTCGCCAAACCCTAACCCTAAAACCCCAACCGTTTATTCGAATACTGG
CAGGAATGGGAGAGACAAGAGACAACGAGTACGAGGATGAGCTTCTCGAC
TACGAGGAAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAA
CGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCA
GAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGA
TTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCT
GGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTG
TGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCCAGGCCAAGTT
ACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCA
TGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCT
TTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAA
TGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAGCTCTTGCTAG
AGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAAT
GCGATAAGATGCTGGAATC
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