CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPS (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P ++ A+ + GF++ + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S + +K+ + YGG +L++ I++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPP (ATP-dependent RNA helicase rhlB OS=Yersinia pestis (strain Pestoides F) GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P ++ A+ + GF++ + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S + +K+ + YGG +L++ I++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPN (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P ++ A+ + GF++ + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S + +K+ + YGG +L++ I++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPE (ATP-dependent RNA helicase rhlB OS=Yersinia pestis GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P ++ A+ + GF++ + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S + +K+ + YGG +L++ I++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPB (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P ++ A+ + GF++ + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S + +K+ + YGG +L++ I++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERPA (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P ++ A+ + GF++ + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S + +K+ + YGG +L++ I++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_YERP3 (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 52/164 (31.71%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F DF L P ++ A+ + GF++ + +Q +P + G DV QA++G GKT F+ ST +P Q AL++ TRELA QI + E S + +K+ + YGG +L++ I++GT GR++ A+ ++L ++ +LDE D+M + Sbjct: 11 FSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQIHSDAESLS-QVTGLKLGLAYGGDGYDKQLKVLESGV-DILIGTTGRLIDYAKQNYINLGAIQVVVLDEADRMYD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RHLB_SHESA (ATP-dependent RNA helicase rhlB OS=Shewanella sp. (strain ANA-3) GN=rhlB PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 49/164 (29.88%), Postives = 87/164 (53.05%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 F D L PE+ +A+ ++GFE + +Q +P + D+ QA++G GKT F+++T P Q A+++ TRELA QI + + + +KV + YGG + + + L ++ I++GT GRI+ R ++L ++ +LDE D+M + Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKH-SHLKVGIVYGGESYDVQRKTL-DQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFD 172
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 57/177 (32.20%), Postives = 94/177 (53.11%), Query Frame = 1 Query: 238 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL--------------QQTELN--PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 + GF L +LR + G+E P+ VQ +P A+ G D++ A++G GKTA F L + +++ N + ALVL TRELA QI E ++FS + ++V V YGG + +DL + I+V TPGR++ + +SL+ +++ ++DE D+ML+ Sbjct: 83 ADGFEAAGLVEAVLRNVARCGYESPTPVQRYSMPIALAGRDLMACAQTGSGKTAAFCLPVVSGLVAAGGSGIGHRERSSFNRAAAKPRALVLAPTRELAAQINEEAKKFS-FQTGLRVVVAYGGTPMYNQLRDLERG--ADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLD 256
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15 Identity = 59/163 (36.20%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL----QQTELNPGQ-VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH-KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 717 FRD +L+ I +GF P+ +Q + P A+ G D+I A++G GKT ++L + Q L PG LVL TRELA QI E +F IK YGGV +DL K +IV+ TPGR++ + +L+ V + +LDE D+ML+ Sbjct: 93 FRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGA-SSKIKSTCIYGGVPKGPQVRDLQKG--VEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLD 252 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |