CN185369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A1_RABIT (Eukaryotic initiation factor 4A-I (Fragment) OS=Oryctolagus cuniculus GN=EIF4A1 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ EL+ ALVL TRELA QI Y+ GG N++ L+ E P I+VGTPGR+ + + LS K ++ F+LDE D+ML Sbjct: 26 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 180
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ EL+ ALVL TRELA QI Y+ GG N++ L+ E P I+VGTPGR+ + + LS K ++ F+LDE D+ML Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ EL+ ALVL TRELA QI Y+ GG N++ L+ E P I+VGTPGR+ + + LS K ++ F+LDE D+ML Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A1_MACFA (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ EL+ ALVL TRELA QI Y+ GG N++ L+ E P I+VGTPGR+ + + LS K ++ F+LDE D+ML Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ EL+ ALVL TRELA QI Y+ GG N++ L+ E P I+VGTPGR+ + + LS K ++ F+LDE D+ML Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 69/156 (44.23%), Postives = 85/156 (54.49%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D L LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ EL+ ALVL TRELA QI Y+ GG N++ L+ E P I+VGTPGR+ + + LS K ++ F+LDE D+ML Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 188
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F DF LK ELL I ++GFE PS +Q E IP A+ G DV+ +AK+G GKTA F++ +LQQ + ++ AL+L TRELA Q +L I+ V GG ++K D+L+ N+ ++VGTPGR+L LA L F++DE DKML Sbjct: 32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHL-GIQCMVTTGGTSLK--DDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKML 185
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25 Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F DF LK ELL I ++GFE PS VQ E IP A+ G D++ +AK+G GKTA FV+ LQQ ++ AL+L TRELA Q +L ++ V GG +++ D+L+ N+ ++VGTPGR+L LA K L F++DE DKML Sbjct: 32 FEDFPLKRELLMGIFEAGFEKPSPVQEESIPMALAGRDILARAKNGTGKTASFVIPCLQQARPKVNKIQALILVPTRELALQTSQVVRTLGKHL-GLQCMVTTGGTSLR--DDILRLNDPVHVLVGTPGRVLDLASRKVADLSECPLFVMDEADKML 185
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25 Identity = 71/156 (45.51%), Postives = 86/156 (55.13%), Query Frame = 1 Query: 247 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 714 F D LK LLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ E+ + ALVL TRELA QI Y+ A GG N++ L+ E P IVVGTPGR+ + + LS K ++ F+LDE D ML Sbjct: 36 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACI-GGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGML 190
BLAST of CN185369 vs. ExPASy Swiss-Prot
Match: RRP3_CRYNE (ATP-dependent rRNA helicase RRP3 OS=Cryptococcus neoformans GN=RRP3 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.785e-25 Identity = 64/162 (39.51%), Postives = 98/162 (60.49%), Query Frame = 1 Query: 235 HSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRIL-ALARDKDLSLKNVRHFILDECDKMLE 717 H+ F D + PEL RA GF+ PS++Q E IP A+ G D+I A++G GKTA F L LQ NP ALVL TRELAYQI + + + ++ AV GG+++ + + + ++ P I+V TPGR++ L K SLK++++ ++DE D++L+ Sbjct: 36 HNKTFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQTLWENPQPFFALVLAPTRELAYQISQQVTSLGSGI-GVRTAVLVGGMDM-MSQSIALSKRPHIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLD 195 The following BLAST results are available for this feature:
BLAST of CN185369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN185369 ID=CN185369; Name=CN185369; organism=Citrus sinensis; type=EST; length=719bpback to top |