DC887816

Overview
NameDC887816
Unique NameDC887816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887816 vs. ExPASy Swiss-Prot
Match: AP3M_DICDI (AP-3 complex subunit mu OS=Dictyostelium discoideum GN=apm3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.466e-12
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = -1 
Query:  164 TIDSIILQFQLPPCILSADLTSNHGTVNV-LSNKICTWSIGRIPKDKAPSLSGTMVLETGLETLRVFPTFQVEFRIMGVALSGLQIDKLDLQNVPNRLYKGFRAVTRAGEYEVRS 505
            +I+ ++          S +LT+N G+  +   +KI  W+IG+IPK+K P L+GT+ L  G  T    P+  ++F+I   A+SGL ID L       + +KG +  T+AG+++VRS
Sbjct:  308 SIEDVVATIPFSKTTSSTNLTANIGSFGMDEQSKILRWNIGKIPKEKTPFLNGTVSLIAGSMTPESTPSIMLQFKIPQYAISGLTIDSLACSE-RYKPFKGVKCTTKAGKFQVRS 421
The following BLAST results are available for this feature:
BLAST of DC887816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AP3M_DICDI4.466e-1234.78AP-3 complex subunit mu OS=Dictyostelium discoideu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887816 EIC Citrus sinensis cDNA clone EIC0933 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887816 ID=DC887816; Name=DC887816; organism=Citrus sinensis; type=EST; length=535bp
ATAAGCCATTCNANTCACTAAATTCAATTGAATGCATTCCTGCAATTGTC
AAATTTCATGAATTACTGCAGTGCTGAATCCAGCTGCAATATATAATACA
TAACAACTTTGCATCCAGTAGCACAATAAGTTGAAATTCATCTTGATACA
AAATATAGCATCACGACCTCACTTCGTATTCACCTGCTCGTGTTACAGCT
CGAAAACCTTTGTAAAGACGATTTGGGACGTTCTGTAGATCCAGTTTATC
AATTTGCAAGCCAGACAGGGCGACACCCATAATCCTAAATTCGACTTGAA
ATGTAGGAAATACACGAAGAGTCTCCAATCCTGTCTCAAGCACCATTGTT
CCACTCAATGAAGGGGCTTTATCTTTTGGAATTCTCCCAATTGACCAAGT
GCAAATCTTATTGGAAAGAACATTCACTGTTCCATGATTTGAAGTCAGAT
CAGCTGATAAAATGCAAGGAGGTAATTGAAATTGCAGGATTATGGAGTCG
ATTGTCTTCCCAGGGATCATTTCGTATTCCAACCA
back to top