CN185353

Overview
NameCN185353
Unique NameCN185353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACDP_MYCBO (Probable acyl-CoA dehydrogenase fadE25 OS=Mycobacterium bovis GN=fadE25 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 65/201 (32.34%), Postives = 100/201 (49.75%), Query Frame = 2
Query:  152 QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            + + ++   A + IAP AA++D+   FP++  +      FN   +  P+E           CI +EE++R   S  L   A + L    L+  GS   K + LP L +   + + A+SE  AGSD   M+ +A      +I+NG K W TNG  +    V A TD   G+ GI+AF++ K   GF+   K  KLG++GS T
Sbjct:   21 EMRSAIRALAEKEIAPHAAEVDEKARFPEEALVALNSSGFN--AVHIPEEYGGQGADSVATCIVIEEVARVDASASL-IPAVNKLGTMGLILRGSEELKKQVLPALAAEGAMASYALSEREAGSDAASMRTRAKADGDHWILNGAKCWITNGGKSTWYTVMAVTDPDRGANGISAFMVHKDDEGFTVGPKERKLGIKGSPT 218          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADM_BOVIN (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADM PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22
Identity = 74/219 (33.79%), Postives = 108/219 (49.32%), Query Frame = 2
Query:  116 SSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            S  S  F + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       SK  T FI+E   PG    +K   +G R SDT
Sbjct:   35 SGFSFEFTEQQKEFQATARKFAREEIIPLAAEYDKTGEYPVPLIKRAWEL-GLMNTH---IPESCGGLGLGTFDSCLISEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYCVTEPVAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKELNMGQRCSDT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADV_HUMAN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.186e-22
Identity = 63/212 (29.72%), Postives = 106/212 (50.00%), Query Frame = 2
Query:  161 ESVGQFARENIAPRAAKIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            E   QF +E + P +   ++ N   ++  L       W+ +      G+  P E          +   +E +      VG++ GAH ++    ++  G+ AQK+KYLPKL SGE V A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G     ITAF++E+G  G +      K+G++ S+T
Sbjct:   96 EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNT 307          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADM_PIG (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADM PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 78/238 (32.77%), Postives = 114/238 (47.90%), Query Frame = 2
Query:   77 SFFTKKKKHSAAF------SSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD---IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            S F  + +H+ A       S  S    + Q +F+ +  +FARE I P AA+ D++  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    L+  G+  Q+ KYL ++     + A  ++EP AGSDV G+K KA++    YIING KMW TNG  A    + A++D       SK  T FI+E   PG    +K   +G R SDT
Sbjct:   16 SHFGWRSQHTKAVPQCEPGSGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWEL-GLMNTH---IPESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACAD8_DICDI (Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=acad8 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 60/205 (29.27%), Postives = 100/205 (48.78%), Query Frame = 2
Query:  140 DTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            + Q QF+     FA+E + P A K D+   FP+DV   +        GI   ++            I +E ++ A  S       H N+C   +  +G+  Q+ K+LP L+S E + +  ++EP +GSD   +  KA +    YI+NG+K + + G  ++  +V  +T  + G KGI+  ++EK  PG S  +K +KLG     T
Sbjct:   41 EDQKQFQSMALDFAQEKMKPFAEKWDKEEYFPRDV--MREAAELGFGGIYVREDVGGSGLSRLDASIIIEALASADVSTTAFISIH-NMCAGLIDIYGTEEQRKKFLPSLVSMEKIASYCLTEPGSGSDAGSLSTKATKDGDHYILNGSKAFISGGGDSEVYLVMVRTGAEKGPKGISCLLVEKDTPGLSFGKKEEKLGWNTQPT 242          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADV_RAT (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.031e-20
Identity = 61/212 (28.77%), Postives = 107/212 (50.47%), Query Frame = 2
Query:  161 ESVGQFARENIAPRAAKIDQSNSFPQDVNLWKL-------MGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            E   QF +E + P A   ++ N   ++ +L K+       +      G+  P E          +    E +      V ++ GAH ++    ++ +G+ AQK+KYLP++ SG+ + A  ++EP++GSDV  ++  A     G  Y +NG+K+W +NG +A    V+AKT IK  + G     ITAF++E+   G +      K+G++ S+T
Sbjct:   96 EGQTQFLKELVGPVARFFEEVNDPAKNDSLEKVEEDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQKEKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKDAATGAVKEKITAFVVERSFGGVTHGLPEKKMGIKASNT 307          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADM_RAT (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadm PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.031e-20
Identity = 76/234 (32.48%), Postives = 108/234 (46.15%), Query Frame = 2
Query:   71 CASFFTKKKKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT--DIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            C +  TK           S    + Q +F+    +FARE I P A   D+S  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV G+K KA++    Y+ING KMW TNG  A    V  ++  D K   SK  T FI+E   PG    +K   +G R SDT
Sbjct:   20 CRAQHTKPSLKQEPGLGFSFELTEQQKEFQTIARKFAREEIIPVAPDYDKSGEYPFPLIKRAWEL-GLINTH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVIIAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAGIKTKAEKKGDEYVINGQKMWITNGGKANWYFVLTRSNPDPKVPASKAFTGFIVEADTPGIHIGKKELNMGQRCSDT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADM_MOUSE (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadm PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.031e-20
Identity = 77/238 (32.35%), Postives = 113/238 (47.48%), Query Frame = 2
Query:   77 SFFTKKKKHSAAFSST------SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT--DIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            S F  + +HS A          S    + Q +F+ +  +FARE I P A + D+S  +P  +    W+L G  N H    P+            C+  EE+  A G  G+     +N L    ++  G+  QK KYL ++     + A  ++EP+AGSDV  +K KA++    Y+ING KMW TNG  A    + A++  D K   SK  T FI+E   PG    +K   +G R SDT
Sbjct:   16 SHFECRTQHSKAAHKQEPGLGFSFELTEQQKEFQATARKFAREEIIPVAPEYDKSGEYPFPLIKRAWEL-GLINAH---IPESCGGLGLGTFDACLITEEL--AYGCTGVQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEKKGDEYVINGQKMWITNGGKANWYFLLARSNPDPKVPASKAFTGFIVEADTPGIHIGKKELNMGQRCSDT 247          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADV_MACFA (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADVL PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.347e-20
Identity = 54/165 (32.73%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  281 GITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            G+  P E          +   +E +     +VG++ GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G     ITAF++E+G  G +      K+G++ S+T
Sbjct:  143 GLQVPSELGGVGLCNTQYARLVEIVGMHDLAVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETLAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGVTHGPPEKKMGIKASNT 307          
BLAST of CN185353 vs. ExPASy Swiss-Prot
Match: ACADV_BOVIN (Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 72/242 (29.75%), Postives = 115/242 (47.52%), Query Frame = 2
Query:   59 ARSLCASFFTKKKKHSAAFSSTSLLFDDTQLQFKESVGQFAR--ENIAPRAAKIDQSNSFPQD-VNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-----ITAFIIEKGMPGFSTAQKLDKLGMRGSDT 754
            ++S     F  +      F   S+L +D     KE VG   R  E +   AAK D      +  +   K +G F   G+  P E          +   +E +      VG+  GAH ++    ++  G+ AQK+KYLPKL SGE + A  ++EP++GSD   ++  A     G  Y +NG+K+W +NG +A    V+AKT +   + G     ITAF++E+   G +      K+G++ S+T
Sbjct:   70 SKSFAVGTFKGQLTTDQVFPYPSVLNEDQTQFLKELVGPVTRFFEEVND-AAKNDMLERVEETTMQGLKELGAF---GLQVPNELGGVGLCNTQYARLVEIVGMYDLGVGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEPSSGSDAASIRSSAVPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPVTDTATGAVKEKITAFVVERSFGGVTHGPPEKKMGIKASNT 307          
The following BLAST results are available for this feature:
BLAST of CN185353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ACDP_MYCBO3.205e-2232.34Probable acyl-CoA dehydrogenase fadE25 OS=Mycobact... [more]
ACADM_BOVIN3.205e-2233.79Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADV_HUMAN4.186e-2229.72Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_PIG5.467e-2232.77Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACAD8_DICDI6.045e-2129.27Isobutyryl-CoA dehydrogenase, mitochondrial OS=Dic... [more]
ACADV_RAT1.031e-2028.77Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADM_RAT1.031e-2032.48Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADM_MOUSE1.031e-2032.35Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
ACADV_MACFA1.347e-2032.73Very long-chain specific acyl-CoA dehydrogenase, m... [more]
ACADV_BOVIN1.759e-2029.75Very long-chain specific acyl-CoA dehydrogenase, m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185353 ID=CN185353; Name=CN185353; organism=Citrus sinensis; type=EST; length=757bp
GAGGGAGAAAGTAAAAAAGGGAAAAAGGTAAGAGAGAAGAATGCAGAGGC
TCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGAAGAAGAAA
CATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGACACTCAATT
ACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACATTGCTCCTC
GTGCGGCAAAAATTGACCAATCAAATTCGTTCCCACAGGATGTTAATTTA
TGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCTCCACAGGA
ATACGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGCAATGGAAG
AAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTGCCCATTCT
AATTTGTGCATCAATCAATTGGTGAGACATGGAAGCCCTGCTCAGAAAGA
CAAGTACTTGCCCAAGCTCATTAGCGGAGAACATGTAGGTGCTCTTGCCA
TGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAATGCAAAGCT
GATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATGTGGTGCAC
CAATGGTCCAGTTGCTCAGACGTTGGTTGTTTACGCAAAAACAGACATTA
AAGCTGGCTCAAAAGGAATCACAGCATTTATCATAGAGAAAGGAATGCCC
GGATTCAGCACTGCCCAGAAGTTAGACAAGCTCGGGATGAGAGGAAGTGA
TACATGT
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