CN185349

Overview
NameCN185349
Unique NameCN185349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2333 contig Csv1_Contig2333:78..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.933e-95
Identity = 167/174 (95.98%), Postives = 171/174 (98.28%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI P+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  250 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 423
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.137e-95
Identity = 167/174 (95.98%), Postives = 172/174 (98.85%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNM+CAADPRHGRYLTASA+FRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV+EYQQYQDATADD
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMVCAADPRHGRYLTASAVFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLVSEYQQYQDATADD 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 6.709e-95
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQ YRALTVPELTQQMWDAKNMMCAADPRHGRYLTASA FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCD+PP+GLKMA TF+GNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQMYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASACFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDMPPRGLKMAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 6.709e-95
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQ YR LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQMYRPLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.144e-94
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRV EQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLVAEYQQYQDATA++
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAEE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB5_WHEAT (Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.495e-94
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQ YR+LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDI P+GL MASTFIGNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD+
Sbjct:  259 PFPRLHFFMVGFAPLTSRGSQMYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADE 432
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.495e-94
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMC+ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRV EQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLVAEYQQYQDATA++
Sbjct:  261 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCSADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAEE 434
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.495e-94
Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            P PRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTF+GNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND VAEYQQYQDATADD
Sbjct:  262 PLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATADD 435
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.495e-94
Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            P PRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTF+GNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND VAEYQQYQDATADD
Sbjct:  262 PLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPVAEYQQYQDATADD 435
[Close]
BLAST of CN185349 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.549e-94
Identity = 164/174 (94.25%), Postives = 171/174 (98.28%), Query Frame = -2 
Query:  265 PFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVREQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 786
            PFPRLHFFMVGFAPLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ++NVQNKNSSYFVEWIPNNVKSSVCDIPP G+KMASTF+GNSTSIQEMFRRV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+
Sbjct:  260 PFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 433
The following BLAST results are available for this feature:
BLAST of CN185349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 405
Match NameE-valueIdentityDescription
TBB3_PEA3.933e-9595.98Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB9_GOSHI5.137e-9595.98Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB4_WHEAT6.709e-9594.83Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB1_WHEAT6.709e-9595.40Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB3_MAIZE1.144e-9495.40Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB5_WHEAT1.495e-9495.40Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5... [more]
TBB4_MAIZE1.495e-9495.40Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB2_SOLTU1.495e-9495.98Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU1.495e-9495.98Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB1_ARATH2.549e-9494.25Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185349 ID=CN185349; Name=CN185349; organism=Citrus sinensis; type=EST; length=787bp
TTTATTTAGCTTCTAGTGATATCTTTTAACTACTTAATACCCATTACATC
ATTTATATTGAAACACATCATACCCATCCCCCATTACAACGAGACAAGTT
ACATACCAATAAACATCACATTCTAATGATCCCTCAACAACAGAAACAAT
AATCACAAACTGAAAGAGCGCCGACAAGAAATAAATTTCAGACAAACTGG
CCCTGGAACATTAGAAAAAGACACCTCATGCTGCAACTTCCTCTTCTTCT
TCCTCGTACTCCTCGTCGTCAGCAGTTGCATCCTGATACTGCTGGTACTC
TGCCACCAAGTCATTCATGTTACTCTCAGCCTCGGTGAACTCCATCTCGT
CCATTCCCTCACCGGTGTACCAGTGCAAGAAAGCTTTCCTCCGAAACATA
GCCGTAAATTGCTCGCGGACTCGCCTAAACATCTCCTGAATTGACGTTGA
ATTTCCAATGAAAGTGGATGCCATTTTCAGACCCTTAGGCGGGATGTCAC
ACACGCTCGACTTGACATTATTTGGTATCCACTCGACAAAGTACGAAGAG
TTCTTGTTTTGGACATTGATCATTTGTTCATCAACCTCTTTAGTACTCAT
CTTACCACGGAACATGGCCGAAGCAGTTAGGTAACGACCGTGGCGTGGGT
CAGCAGCACACATCATGTTCTTAGCATCCCACATCTGCTGGGTTAGTTCC
GGCACAGTAAGGGCACGATACTGCTGTGATCCTCGTGATGTCAAGGGTGC
AAACCCAACCATGAAGAAATGGAGACGCGGGAAAGGG
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