CN185346

Overview
NameCN185346
Unique NameCN185346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX39_HUMAN (ATP-dependent RNA helicase DDX39 OS=Homo sapiens GN=DDX39 PE=1 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.832e-58
Identity = 112/159 (70.44%), Postives = 133/159 (83.65%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQV+IFVKSV R   L +LLVE NFP+I IH GM+QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV++ ELPE+ID STY+
Sbjct:  265 YVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYI 423          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_MAGGR (ATP-dependent RNA helicase SUB2 OS=Magnaporthe grisea GN=SUB2 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 9.090e-58
Identity = 110/162 (67.90%), Postives = 131/162 (80.86%), Query Frame = -2
Query:  332 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYMPS 814
            ++ L E EKNRKLN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYDMP  AD+YLHRVGRAGRFGTKGLA++FV++  D ++L  ++ RFEV I E P+  ID STYM S
Sbjct:  275 FVALEEKEKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLAVSFVTNDQDKEVLTAIEKRFEVPIPEFPKDGIDASTYMAS 436          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_DEBHA (ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii GN=SUB2 PE=3 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.090e-58
Identity = 107/160 (66.88%), Postives = 132/160 (82.50%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            YIKL E EKNRKL+DLLD+L+FNQV+IFV+S  RA ELNKLL   NFPSI +HSG+ QEER+ RYK FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGLA++ VS+  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  274 YIKLDEKEKNRKLSDLLDSLEFNQVIIFVRSTQRANELNKLLCSSNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSLVSTKDDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 433          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_DROME (ATP-dependent RNA helicase WM6 OS=Drosophila melanogaster GN=Hel25E PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.025e-57
Identity = 111/159 (69.81%), Postives = 132/159 (83.02%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+ L E EKN+KL +LLD L+FNQVVIFVKSV R   L++LL E NFP+I IH GM+QEERL RY+ FK+  KRILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN+VQ RF+V+I ELPE+ID STY+
Sbjct:  263 YVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYI 421          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_PONAB (Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=BAT1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_PIG (Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT1 PE=3 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_PANTR (Spliceosome RNA helicase BAT1 OS=Pan troglodytes GN=BAT1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
The following BLAST results are available for this feature:
BLAST of CN185346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX39_HUMAN1.832e-5870.44ATP-dependent RNA helicase DDX39 OS=Homo sapiens G... [more]
SUB2_MAGGR9.090e-5867.90ATP-dependent RNA helicase SUB2 OS=Magnaporthe gri... [more]
SUB2_DEBHA9.090e-5866.88ATP-dependent RNA helicase SUB2 OS=Debaryomyces ha... [more]
UAP56_DROME2.025e-5769.81ATP-dependent RNA helicase WM6 OS=Drosophila melan... [more]
UAP56_RAT3.454e-5769.81Spliceosome RNA helicase Bat1 OS=Rattus norvegicus... [more]
UAP56_PONAB3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=B... [more]
UAP56_PIG3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT... [more]
UAP56_PANTR3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Pan troglodytes G... [more]
UAP56_MOUSE3.454e-5769.81Spliceosome RNA helicase Bat1 OS=Mus musculus GN=B... [more]
UAP56_MACMU3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185346 ID=CN185346; Name=CN185346; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATTAACAGTGCCA
TTAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAAT
AACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAATC
CCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCT
GACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAG
AAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAA
ATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGAT
GTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTG
AACCTGATTGAGAATATCGGAGTCGGAAGCAGATGATACAAAAGTAATTG
CAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAA
GTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTC
AATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGT
TCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATG
CCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTT
TAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAA
AGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCA
CTCAATTTGATGTAG
back to top