CN185346

Overview
NameCN185346
Unique NameCN185346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:927..1742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_CAEEL (Spliceosome RNA helicase BAT1 homolog OS=Caenorhabditis elegans GN=hel-1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 110/159 (69.18%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL E EKNR+L +LLDAL+FNQVVIFVK+V R   L++LL E NFPSI IH  M+QEERL+RY+ FK+  KRILVATDL GRG+DIERVNIV NYDMP+ +D+YLHRV RAGRFGTKGLAITFVS  +D+  LN VQ RF++ I ELPE+ID STY+
Sbjct:  262 YVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISITELPEKIDVSTYI 420          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: UAP56_BOVIN (Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.454e-57
Identity = 111/159 (69.81%), Postives = 131/159 (82.39%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL + EKNRKL DLLD L+FNQVVIFVKSV R   L +LLVE NFP+I IH GM QEERL+RY+ FK+  +RILVAT+L GRG+DIERVNI  NYDMP+ +DTYLHRV RAGRFGTKGLAITFVS  +D+ ILN VQ RFEV+I ELP++ID S+Y+
Sbjct:  266 YVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYI 424          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_SCLS1 (ATP-dependent RNA helicase sub2 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=sub2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.515e-55
Identity = 103/159 (64.78%), Postives = 129/159 (81.13%), Query Frame = -2
Query:  341 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTY 814
            YIKL E EKNR+LN+LLD L FNQV+IFVKS  RA EL+KLL ECNFPS+ IHSG+SQEER+ R+  FK+ NKRI VATD+ GRGID+ ++N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FVS+ +D ++L  V+ RFEV + E PE  +D++ Y
Sbjct:  282 YIKLEEREKNRRLNELLDELSFNQVIIFVKSTVRATELDKLLRECNFPSVAIHSGVSQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYDLPPDADSYLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVEKRFEVALPEYPEGGVDSAAY 440          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.515e-55
Identity = 103/160 (64.38%), Postives = 125/160 (78.12%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            Y+KL E EKNRKLNDLLD L+FNQV+IFV+S  R  EL+KLL ECNFPS  +HSG+ QEER+ RYK FKE   RI V+TD+ GRGID+ER+N+ INYDMPD AD YLHRVGRAGRFGTKGL+I+FVSS  D  +L  ++ RF  +I E PE  I +++YM
Sbjct:  277 YVKLDEREKNRKLNDLLDNLEFNQVIIFVRSTLRCTELDKLLRECNFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEERFAAEIPEFPEDGISSASYM 436          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_EMENI (ATP-dependent RNA helicase sub2 OS=Emericella nidulans GN=sub2 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.096e-54
Identity = 107/160 (66.88%), Postives = 128/160 (80.00%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG        RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVS+  D  +L  ++ RFEV + E PE+ +D+STYM
Sbjct:  299 YIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTIRANELDKLLRECNFPSIAVHSG--------RYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTPEDEQVLKDIEKRFEVALPEYPEEGVDSSTYM 450          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB22_VANPO (ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-2 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.317e-53
Identity = 105/160 (65.62%), Postives = 123/160 (76.88%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            YIKL E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL E NFP+I +H  M Q ER+ RYK FKE  KRI V+TD+ GRGIDIER+N+ INYD+   AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  281 YIKLQENEKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGNMKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 440          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_KLULA (ATP-dependent RNA helicase SUB2 OS=Kluyveromyces lactis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.026e-53
Identity = 104/160 (65.00%), Postives = 124/160 (77.50%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            YIKL+E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL   NFP+I +H  M QEER+ RYK FKE  KRI V+TD+ GRGIDIER+N+ INYDMP+ AD YLHRVGRAGRFGTKGLAI+ +SS  D  +L ++Q RF+V I E PE+ +D STY+
Sbjct:  276 YIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTKGLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPSTYL 435          
The following BLAST results are available for this feature:
BLAST of CN185346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UAP56_HUMAN3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=B... [more]
UAP56_CHICK3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=... [more]
UAP56_CANFA3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Canis familiaris ... [more]
UAP56_CAEEL3.454e-5769.18Spliceosome RNA helicase BAT1 homolog OS=Caenorhab... [more]
UAP56_BOVIN3.454e-5769.81Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT... [more]
SUB2_SCLS15.515e-5564.78ATP-dependent RNA helicase sub2 OS=Sclerotinia scl... [more]
SUB2_PHANO5.515e-5564.38ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
SUB2_EMENI2.096e-5466.88ATP-dependent RNA helicase sub2 OS=Emericella nidu... [more]
SUB22_VANPO2.317e-5365.63ATP-dependent RNA helicase SUB2-2 OS=Vanderwaltozy... [more]
SUB2_KLULA3.026e-5365.00ATP-dependent RNA helicase SUB2 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185346 ID=CN185346; Name=CN185346; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATTAACAGTGCCA
TTAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAAT
AACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAATC
CCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCT
GACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAG
AAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAA
ATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGAT
GTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTG
AACCTGATTGAGAATATCGGAGTCGGAAGCAGATGATACAAAAGTAATTG
CAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAA
GTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTC
AATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGT
TCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATG
CCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTT
TAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAA
AGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCA
CTCAATTTGATGTAG
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