CN185346

Overview
NameCN185346
Unique NameCN185346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:927..1742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 63/159 (39.62%), Postives = 94/159 (59.12%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y  + E +K   LN L   L  NQ +IF  S +R   L K + +  +     H+ M Q+ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I+ +P  ID S Y+
Sbjct:  250 YAFVEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNRVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELGTEIQAIPATIDKSLYV 407          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX20_HUMAN (Probable ATP-dependent RNA helicase DDX20 OS=Homo sapiens GN=DDX20 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 56/146 (38.36%), Postives = 89/146 (60.96%), Query Frame = -2
Query:  356 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 793
            EK + L +L   + FNQ ++F    SRA  L  +L    FP+ CI   M+Q +RL      K  + R+L++TDL  RGID E+VN+V+N D+P   +TY+HR+GRAGRFGT GL +T+     + +++ ++  +  +++  LP+ I
Sbjct:  295 EKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPI 440          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = -2
Query:  356 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 778
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  256 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 395          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 58/141 (41.13%), Postives = 89/141 (63.12%), Query Frame = -2
Query:  356 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 778
            L DL D L   Q VIF  +  +   L   + E NF    +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  257 LCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 396          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX6_XENTR (Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis GN=ddx6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  312 YAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSSIDKSLYV 469          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX6_MOUSE (Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  313 YAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX6_HUMAN (Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  313 YAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y  ++E +K   LN L   L  NQ +IF  S  R   L K + +  +    IH+ M QE R   +  F+ G  R LV TDL  RGIDI+ VN+VIN+D P  A+TYLHR+GR+GRFG  GLAI  + +  D   L  ++ +   +IK +P  ID S Y+
Sbjct:  313 YAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLI-TYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYV 470          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.118e-26
Identity = 56/138 (40.58%), Postives = 87/138 (63.04%), Query Frame = -2
Query:  365 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 778
            L D+ D+L   Q VIF  +  +  +L + + + NF    +H  M Q+ER    K F+ G  R+L+ TD++ RGID+++V++VINYD+P   + Y+HR+GR+GRFG KG+AI FV + SD  IL  ++  +   I E+P
Sbjct:  262 LCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVAINFVKN-SDIRILRDIEQFYSTQIDEMP 398          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.118e-26
Identity = 55/143 (38.46%), Postives = 91/143 (63.64%), Query Frame = -2
Query:  350 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 778
            L DL D+L   Q VIF  +  +   L+  L + NF  + +H  M QE+R      F+ G+ R+L++TD+  RGID+++V++VINYD+P+  + Y+HR+GR+GRFG KG+AI F++S SD   + +++  + + I  +P  + T
Sbjct:  256 LCDLYDSLTITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITS-SDLSKMKEIEKYYRIKISPVPADLST 397          
The following BLAST results are available for this feature:
BLAST of CN185346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_VANPO2.414e-2639.62ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DDX20_HUMAN2.414e-2638.36Probable ATP-dependent RNA helicase DDX20 OS=Homo ... [more]
FAL1_NEUCR3.153e-2641.13ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_MAGGR3.153e-2641.13ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
DDX6_XENTR3.153e-2641.51Probable ATP-dependent RNA helicase ddx6 OS=Xenopu... [more]
DDX6_MOUSE3.153e-2641.51Probable ATP-dependent RNA helicase DDX6 OS=Mus mu... [more]
DDX6_HUMAN3.153e-2641.51Probable ATP-dependent RNA helicase DDX6 OS=Homo s... [more]
DDX6_CHICK3.153e-2641.51Probable ATP-dependent RNA helicase DDX6 OS=Gallus... [more]
IF4A_DICDI4.118e-2640.58Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
FAL1_VANPO4.118e-2638.46ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185346 ID=CN185346; Name=CN185346; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATTAACAGTGCCA
TTAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAAT
AACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAATC
CCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCT
GACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAG
AAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAA
ATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGAT
GTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTG
AACCTGATTGAGAATATCGGAGTCGGAAGCAGATGATACAAAAGTAATTG
CAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAA
GTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTC
AATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGT
TCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATG
CCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTT
TAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAA
AGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCA
CTCAATTTGATGTAG
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