CN185343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24 Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +R F+ +G ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL RAKS++F GY+ G P Sbjct: 4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNP 157
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24 Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +R F+ +G ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL RAKS++F GY+ G P Sbjct: 4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNP 157
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24 Identity = 62/156 (39.74%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +R F+ + ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++K+F +E+ E++ N L A QA L L G+ RRA Y LR IM +GA+G E+ +SGKL RAKS++F GY+ G P Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNP 157
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24 Identity = 59/156 (37.82%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +R F+ +G ++E L +EL GY G++++ TP+ T+++I R V+G GR+IRELT ++++RF +E+ E++ N A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL RAKS++F GY+ G P Sbjct: 4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNP 157
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24 Identity = 61/156 (39.10%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +R F+ +G ++E L +EL GY G++++ TP+ T++ I A V+G GRRIRELT +++K+F +E+ E++ N L A QA L L G+ RRA Y +R IM +GA+G E+ +SGKL RAKS++F GY+ G P Sbjct: 4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNP 157
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23 Identity = 61/162 (37.65%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612 +RKFV DG A ++E +L GY G+E+ TP+ T+I+I + + V+G+ G+ IR+LT V R+ ++ A++V L A A L + G R+A + LR +M +GA GCEV++SGKL R++ KF DGY+ SG PV+E +D Sbjct: 4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVD 163
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22 Identity = 59/162 (36.42%), Postives = 93/162 (57.41%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLD 612 ++KFV DG A ++E +L+ GY G+E+ TP+ T+I+I + + V+G+ G+ IR+LT V ++ ++ A++V L A A L + G R+A + LR +M +GA GCEV++SGKL R++ KF DGY+ SG PV E +D Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVD 163
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22 Identity = 57/156 (36.54%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +R F+ + ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL RAKS++F GY+ G P Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNP 157
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22 Identity = 57/156 (36.54%), Postives = 92/156 (58.97%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQP 594 +R F+ + ++E L +EL GY G++++ TP+ T++II A V+G GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y +R IM +GA+G E+ +SGKL RAKS++F GY+ G P Sbjct: 4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNP 157
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22 Identity = 59/163 (36.20%), Postives = 96/163 (58.90%), Query Frame = 1 Query: 127 KRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDS 615 ++KFV +G A ++E L +EL GY G+ + TP+ T+I + A + V+G+ G+ IR+LT +++RF+ +++ + V L A A L L G R+A +LR +M+SGA GCE+++SGKL PR++ KF GY+ SG+P E +D+ Sbjct: 4 EKKFVQEGFTKALVDEYLAKELDRAGYGGMVMNRTPMGTQITVYAEKPGMVIGKGGKLIRKLTRDLERRFRLDNPQIDV--QDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDT 164 The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bpback to top |