CN185333
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23 Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = -2 Query: 340 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 675 N +++VG +IV RAL PL++IA NAG GSVV +V+ + +G+NAATG YEDL+A+G+IDP KVVR L+ A+SVA + ++ +V E+ + EPAMP G+ G G Sbjct: 434 NHDQQVGINIVTRALEEPLRIIASNAGAEGSVVVNRVVETKETNFGFNAATGVYEDLVASGVIDPAKVVRHALQAAASVAGLMITTEAMVAELPKDEPAMPGGDMGGMGGMG 545
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = -2 Query: 370 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 696 AIKET ++ +E++GADIV++AL P LIA NAGV G VV EK++ SD + GYNA T YE+L AG+IDP KV RC L++A+SVA L + +VV+ +P+P PA Sbjct: 472 AIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSD-WENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 577
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4) HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22 Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = -2 Query: 346 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 696 + K L NDEE+V ADI+ +AL PL +A NAGV GSV+ EKV + ++ GYN TG EDL+AAGIIDP KVVR L++A+S+A L ++ +VVE +PEPA PA M G Sbjct: 428 SFKAQLSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKVKEATGNQ-GYNVITGKIEDLIAAGIIDPAKVVRSALQNAASIAGMVLTTEALVVE--KPEPAAPAMPDMGGMG 541
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22 Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = -2 Query: 361 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 669 +E++G IVKRA PL+ I N+G G++V +KV + N+ YGYNAAT YEDL+AAG+IDPTKV R L+HA+S+A L ++ ++ EI E + A PAG P Sbjct: 432 DEQIGVSIVKRACEEPLRQIVSNSGTEGAIVVDKVRENANNNYGYNAATDTYEDLVAAGVIDPTKVTRSALQHAASIAGLMLTTEAMIAEIPEKKSA-PAGGP 533
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22 Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = -2 Query: 361 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 678 DN++E G +I+KRA+ PL+ I NAG G+VV +KV +GYNA T YE+L AAG++DP KV R LE+A+S+A FL ++CV+VE KE +P MP G P Sbjct: 432 DNEDETTGIEIIKRAIEEPLRQIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22 Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = -2 Query: 346 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 675 N++E G +IVKRA+ PL+ I NAG G+V++++V + +GYNA TG YEDL AG+IDPTKV R LE+A+S+A L ++CV+ E+KE PA PA PM G Sbjct: 433 NEDETTGIEIVKRAIEEPLRQIVENAGKEGAVIAQRV-KEEKDDFGYNARTGIYEDLYVAGVIDPTKVARVALENAASIAGMLLTTECVITEVKEENPA-PAMPPMGGGG 540
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22 Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = -2 Query: 361 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 696 AIKE L++ +E++GADIV++AL P LIA NAG+ G VV EK++ S+ + GYNA T YE+L+ AG+IDP KV RC L++A+SVA L + +VV+ +P+P P P Sbjct: 432 AIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22 Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = -2 Query: 337 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 669 EE +GA+IV AL PL IA NAG NG+VV+E V S N++ GYNAA G+Y D++AAGI+DP KV R L++A+S+A L ++C+V ++ E + A PAG M + Y Sbjct: 435 EELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22 Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = -2 Query: 361 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 678 +ND+E G I+KRA+ PL+ I NAG G+VV +KV S +GYNA T YE++ AAG++DP KV R LE+A+S+A FL ++CV+VE KE +P MP G P Sbjct: 432 ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22 Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = -2 Query: 361 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 678 +ND+E G I+KRA+ PL+ I NAG G+VV +KV S +GYNA T YE++ AAG++DP KV R LE+A+S+A FL ++CV+VE KE +P MP G P Sbjct: 432 ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536 The following BLAST results are available for this feature:
BLAST of CN185333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185333 ID=CN185333; Name=CN185333; organism=Citrus sinensis; type=EST; length=697bpback to top |