CN185333

Overview
NameCN185333
Unique NameCN185333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:189..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_MAGSM (60 kDa chaperonin OS=Magnetococcus sp. (strain MC-1) GN=groL PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 54/112 (48.21%), Postives = 77/112 (68.75%), Query Frame = -2
Query:  340 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 675
            N +++VG +IV RAL  PL++IA NAG  GSVV  +V+ +    +G+NAATG YEDL+A+G+IDP KVVR  L+ A+SVA   + ++ +V E+ + EPAMP G+     G G
Sbjct:  434 NHDQQVGINIVTRALEEPLRIIASNAGAEGSVVVNRVVETKETNFGFNAATGVYEDLVASGVIDPAKVVRHALQAAASVAGLMITTEAMVAELPKDEPAMPGGDMGGMGGMG 545          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = -2
Query:  370 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 696
            AIKET ++ +E++GADIV++AL  P  LIA NAGV G VV EK++ SD  + GYNA T  YE+L  AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  PA
Sbjct:  472 AIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSD-WENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 577          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = -2
Query:  346 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 696
            + K  L NDEE+V ADI+ +AL  PL  +A NAGV GSV+ EKV  +  ++ GYN  TG  EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  +PEPA PA   M   G
Sbjct:  428 SFKAQLSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKVKEATGNQ-GYNVITGKIEDLIAAGIIDPAKVVRSALQNAASIAGMVLTTEALVVE--KPEPAAPAMPDMGGMG 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = -2
Query:  361 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 669
            +E++G  IVKRA   PL+ I  N+G  G++V +KV  + N+ YGYNAAT  YEDL+AAG+IDPTKV R  L+HA+S+A   L ++ ++ EI E + A PAG P
Sbjct:  432 DEQIGVSIVKRACEEPLRQIVSNSGTEGAIVVDKVRENANNNYGYNAATDTYEDLVAAGVIDPTKVTRSALQHAASIAGLMLTTEAMIAEIPEKKSA-PAGGP 533          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = -2
Query:  361 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 678
            DN++E  G +I+KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YE+L AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  432 DNEDETTGIEIIKRAIEEPLRQIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = -2
Query:  346 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 675
            N++E  G +IVKRA+  PL+ I  NAG  G+V++++V   +   +GYNA TG YEDL  AG+IDPTKV R  LE+A+S+A   L ++CV+ E+KE  PA PA  PM   G
Sbjct:  433 NEDETTGIEIVKRAIEEPLRQIVENAGKEGAVIAQRV-KEEKDDFGYNARTGIYEDLYVAGVIDPTKVARVALENAASIAGMLLTTECVITEVKEENPA-PAMPPMGGGG 540          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 55/112 (49.11%), Postives = 78/112 (69.64%), Query Frame = -2
Query:  361 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 696
            AIKE L++ +E++GADIV++AL  P  LIA NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  P   P
Sbjct:  432 AIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.625e-22
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  337 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 669
            EE +GA+IV  AL  PL  IA NAG NG+VV+E V S  N++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  435 EELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = -2
Query:  361 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 678
            +ND+E  G  I+KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  432 ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = -2
Query:  361 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 678
            +ND+E  G  I+KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  432 ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
The following BLAST results are available for this feature:
BLAST of CN185333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_MAGSM9.539e-2348.2160 kDa chaperonin OS=Magnetococcus sp. (strain MC-... [more]
RUBA_ARATH1.627e-2252.29RuBisCO large subunit-binding protein subunit alph... [more]
CH602_SYNY31.627e-2251.2860 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH60_SOLUE2.125e-2250.4960 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH60_BACV82.775e-2250.0060 kDa chaperonin OS=Bacteroides vulgatus (strain ... [more]
CH60_AZOPC2.775e-2249.0960 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]
RUB1_BRANA3.625e-2249.11RuBisCO large subunit-binding protein subunit alph... [more]
CH601_SYNS93.625e-2248.6560 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH60_BACFR4.734e-2250.0060 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN4.734e-2250.0060 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185333 ID=CN185333; Name=CN185333; organism=Citrus sinensis; type=EST; length=697bp
ATGTAGACCAAGAGTTATAACATTTAAGCTCGAGGAACACTGAACAGTAA
CAAATGTGAGTACCCGCAGAATTAGTATCAGACTGTGAAGGAGATGAGCA
AAATAAAATTTCTTTCACTCAAAAAGTTCAAAATCATTGCAATTGTACAT
CTAATTGCAAATTAATACGAGCCGTACTCTGGCAAGCTATCCTCACCAGA
ATCCATAAACTCTACTAAGTCGAGTAATTGAATTTACAAGAAGAAGAGAA
CCCAACGCTGTCAAACTGAAAGATAGTTGCTATAACGAAGTCAGAACCTT
ATTTGCTTGCCTCCCGTGACCTTGTTAATTAGCTTAGTATCCATATCCTG
AGTTGTCCATAGGGTTACCCGCAGGCATAGCGGGTTCAGGCTCCTTGATC
TCAACCACCACACAGTCGGACATCAAGAAGGTTTTTGCCACCGAGGAAGC
ATGCTCCAAGCAACATCTAACCACCTTGGTAGGATCAATAATTCCTGCAG
CCATTAGATCTTCGTAGTTTCCAGTTGCAGCATTGTATCCATATTTATGA
TTGTCACTTGAAAGCACCTTCTCGCTGACCACACTTCCATTAACACCGGC
ATTTATGGCAATTAATTTCAGTGGGTAGCACAGAGCTCTTTTAACAATAT
CTGCTCCAACCTTTTCTTCATCATTATCAAGGGTTTCCTTAATGGCA
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