CN185333

Overview
NameCN185333
Unique NameCN185333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:189..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.799e-21
Identity = 49/101 (48.51%), Postives = 74/101 (73.27%), Query Frame = -2
Query:  373 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 675
            ND++++G DIV++AL  PL+ IA NAG +G+VV+ KVL +  + +G++A  G ++DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E  EP+PA P
Sbjct:  433 NDDQRIGGDIVRKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAP 533          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = -2
Query:  370 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 696
            AIKE L++ +E++GADIV++AL  P  LIA NAG+ G VV EK+ + +  + GYNA T  YE+L+ +G+IDP KV RC L++A+SVA   L +  +VVE  +P+ A+ A
Sbjct:  473 AIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGE-WEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAA 580          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACTN (60 kDa chaperonin OS=Bacteroides thetaiotaomicron GN=groL PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = -2
Query:  361 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 678
            DN +E  G  I+KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YE+L AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  432 DNADETTGIGIIKRAIEEPLREIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVARVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  337 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 669
            EE +GA+IV  AL  PL  IA NAGVNG+VV+E V +   ++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  435 EELIGANIVAAALTAPLMRIAENAGVNGAVVAENVKAKSFNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 49/112 (43.75%), Postives = 74/112 (66.07%), Query Frame = -2
Query:  340 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 675
            ND++K G +IV++AL YP + IAINAG +GSV+  K+L  D + YGY++ TG Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +       G P    G G
Sbjct:  433 NDDQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDQYSYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPKKNTG-AGGMPPGGGGMG 543          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 54/110 (49.09%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  346 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 675
            N+ EKVG DIV+RA+  PL+ I+ N G  GS+V  KV  +    +G+NAATG YEDL+ AG+IDPTKV R  L++A+SVA   L +  +V E  + E A PAG  M   G
Sbjct:  432 NEGEKVGLDIVRRAIEEPLRQISGNGGYEGSIVVNKVKEAKEAAFGFNAATGEYEDLVKAGVIDPTKVSRSALQNAASVASLMLTTMAMVAEKPKEESAAPAGGGMGGMG 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  337 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 669
            EE +GA+IV  AL  PL  IA NAG NG+VV+E V S    + GYNAATG+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  435 EELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRAISE-GYNAATGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_PARD8 (60 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groL PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 53/113 (46.90%), Postives = 71/113 (62.83%), Query Frame = -2
Query:  340 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 678
            DN++E  G +IVKRA+  PL+ I  NAG  G+V+ +KV       +GYNA    +E+L  AG+IDP KV R  LE+A+S+A  FL ++CV+ E KE  PAMP  NP    G G
Sbjct:  432 DNEDETTGIEIVKRAIEEPLRQIVANAGKEGAVIVQKVKEGKGD-FGYNARKDCFENLCEAGVIDPAKVTRVALENAASIAGMFLTTECVIAEKKEETPAMPPMNPGMGGGMG 543          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_RHIEC (60 kDa chaperonin 2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = -2
Query:  355 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 675
            ND+++VG DIV+RA+  P++ IA NAG  GS++  K+    +  YG+NA TG Y DL A G+IDP KVVR  L+ A+SVA   + ++ ++ E   KE  PAMPAG  MD
Sbjct:  433 NDDQRVGVDIVRRAIEAPVRQIAENAGAEGSIIVGKLREKSDFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASVAGLLVTTEAMIAEKPKKEAAPAMPAGAGMD 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = -2
Query:  346 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 669
            +E +GA+IVKRAL  PL+ IA NAG +  VV+  V  +D   YG+NAA+G Y D+  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP   PM + G
Sbjct:  432 DELIGAEIVKRALFAPLRQIAENAGFDAGVVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
The following BLAST results are available for this feature:
BLAST of CN185333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_GLUDA1.799e-2148.5160 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
RUBA_PEA2.350e-2148.62RuBisCO large subunit-binding protein subunit alph... [more]
CH60_BACTN2.350e-2150.0060 kDa chaperonin OS=Bacteroides thetaiotaomicron ... [more]
CH602_SYNPW2.350e-2147.7560 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_BRAJA2.350e-2143.7560 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH602_ANADE2.350e-2149.0960 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH601_SYNPX3.069e-2148.6560 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH60_PARD84.008e-2146.9060 kDa chaperonin OS=Parabacteroides distasonis (s... [more]
CH602_RHIEC4.008e-2147.7160 kDa chaperonin 2 OS=Rhizobium etli (strain CFN ... [more]
CH60_CAMFF6.836e-2150.9360 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185333 ID=CN185333; Name=CN185333; organism=Citrus sinensis; type=EST; length=697bp
ATGTAGACCAAGAGTTATAACATTTAAGCTCGAGGAACACTGAACAGTAA
CAAATGTGAGTACCCGCAGAATTAGTATCAGACTGTGAAGGAGATGAGCA
AAATAAAATTTCTTTCACTCAAAAAGTTCAAAATCATTGCAATTGTACAT
CTAATTGCAAATTAATACGAGCCGTACTCTGGCAAGCTATCCTCACCAGA
ATCCATAAACTCTACTAAGTCGAGTAATTGAATTTACAAGAAGAAGAGAA
CCCAACGCTGTCAAACTGAAAGATAGTTGCTATAACGAAGTCAGAACCTT
ATTTGCTTGCCTCCCGTGACCTTGTTAATTAGCTTAGTATCCATATCCTG
AGTTGTCCATAGGGTTACCCGCAGGCATAGCGGGTTCAGGCTCCTTGATC
TCAACCACCACACAGTCGGACATCAAGAAGGTTTTTGCCACCGAGGAAGC
ATGCTCCAAGCAACATCTAACCACCTTGGTAGGATCAATAATTCCTGCAG
CCATTAGATCTTCGTAGTTTCCAGTTGCAGCATTGTATCCATATTTATGA
TTGTCACTTGAAAGCACCTTCTCGCTGACCACACTTCCATTAACACCGGC
ATTTATGGCAATTAATTTCAGTGGGTAGCACAGAGCTCTTTTAACAATAT
CTGCTCCAACCTTTTCTTCATCATTATCAAGGGTTTCCTTAATGGCA
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