CN185333

Overview
NameCN185333
Unique NameCN185333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:189..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_NITHX (60 kDa chaperonin 2 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 48/109 (44.04%), Postives = 76/109 (69.72%), Query Frame = -2
Query:  358 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPM 675
            ND++K G +IV++AL  P + IAINAG +GSV+  K+L  + + YG+++ +G Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMPAG  M
Sbjct:  433 NDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQSGEYGNLISKGIIDPTKVVRAAIQNAASVAALLITTEAMVAELPKKNAGGPAMPAGGGM 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = -2
Query:  355 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 678
            DN ++K G DIV+RA+  P + I  NAG +GS+V  K+L  + + +G+NAATG Y+DL+  G+IDP KVVR  L+ A+SVA   + ++ +V E   K+  PA+P G  MD
Sbjct:  432 DNPDQKAGVDIVRRAIQVPARQIIQNAGEDGSLVVGKLLEKNTYNWGFNAATGEYQDLVGVGVIDPAKVVRTALQDAASVASLLITTEALVAEKPKKDVAPALPPGGGMD 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_GRABC (60 kDa chaperonin OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=groL PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 49/111 (44.14%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  346 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 678
            DN ++KVG +I++RAL  PL+ I+ NAG +G+V++ KVL +  + +G++A TG ++DL++AGIIDP KVVR  L+ A+SVA   + ++ ++ E  +PE   PAG P    G
Sbjct:  432 DNGDQKVGIEIIRRALQSPLRQISENAGEDGAVIAGKVLENGTYNFGFDAQTGEFKDLVSAGIIDPAKVVRTALQDAASVAALLITTEAMIAE--KPEKKAPAGAPPGGMG 540          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_ACEP3 (60 kDa chaperonin OS=Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) GN=groL PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 52/112 (46.43%), Postives = 78/112 (69.64%), Query Frame = -2
Query:  340 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 675
            ND+++VG DI++RAL  PL+ IA NAG +G+V++ KVL + ++ +G++A  G Y++L+ AGIIDP KVVR  L+ A+SVA   + ++ +V E  E + A PAG P D  G G
Sbjct:  433 NDDQRVGGDIIRRALQAPLRQIAHNAGEDGAVIANKVLENSDYNFGFDAQAGEYKNLVEAGIIDPAKVVRTALQDAASVAGLLITTEAMVAERPE-KKAAPAGGP-DMGGMG 542          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH603_BRAJA (60 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN=groL3 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = -2
Query:  358 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPM 678
            +ND++K G +IV++AL +P + IAINAG +GS+V  KVL ++ + +G++A TG Y +L++ GIIDP KVVR  +++ASSVA   + ++ +V E+ +     PAMPA   M
Sbjct:  432 ENDDQKTGVEIVRKALSWPARQIAINAGEDGSIVVGKVLDNEQYSFGFDAQTGEYSNLVSKGIIDPAKVVRIAVQNASSVAGLLITTEAMVAELPKKATAGPAMPAAPGM 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_ROSDO (60 kDa chaperonin 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=groL2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = -2
Query:  340 TLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 684
            T DN+++ VG  IV++AL  PL+ IA NAGV+GSVV+ K+  SD+ K+G+NA T  Y D+ A G+IDP KVVR  L+ A+S+A   + ++ +V +    E A P G   D  G G
Sbjct:  430 TGDNNDQNVGISIVRKALEAPLRQIAENAGVDGSVVAGKIRESDDLKFGFNAQTEEYGDMFAFGVIDPAKVVRTALQDAASIAGLLITTEAMVADRPAKEGAAPGGGMPDMGGMG 544          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 54/110 (49.09%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  346 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 675
            ++ EK G DIV+RAL  PL+ IA N G   S+V  KV  S +  +G+NAATG+YEDL+ +G+IDPTKV R  L++ASSVA   L +  +V E  + E A PAG  M   G
Sbjct:  432 SEGEKFGLDIVRRALEEPLRQIAGNGGYEASIVVNKVKESKDTNFGFNAATGDYEDLVKSGVIDPTKVSRSALQNASSVASLMLTTMALVAEKPKEESAAPAGGGMGGMG 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = -2
Query:  346 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 669
            +EK+G +I+KRA+  PLK IA NAG +  VV+  V  + N  +G+NAA G Y D+ A GIIDP KV R  L++A SV+   L ++  + EIKE +PAMP  + M   G
Sbjct:  433 DEKIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = -2
Query:  373 AIKETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 696
            A+KE L  DE K+GADIVKRAL  PL+ IA NAG +  V++  V  +    YG++AA G + ++  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP
Sbjct:  424 AVKENLKGDE-KIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYGFDAACGEFVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEATVSEIKEDKPAMP 530          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_WOLRE (60 kDa chaperonin OS=Wolinella recta GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  346 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNPMDNSG 669
            +E +GADIV+RAL  PL+ IA NAG +  VV+  V  S +  YG+NAATG Y D+  AGIIDP KV R  L++A SVA   L ++  + E+KE  P PAMP  + M   G
Sbjct:  432 DEAIGADIVRRALTAPLRQIAENAGFDAGVVANSVSVSKDDNYGFNAATGEYVDMFKAGIIDPVKVERIALQNAVSVASLLLTTEATISELKEDKPMPAMPDMSGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CN185333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_NITHX6.836e-2144.0460 kDa chaperonin 2 OS=Nitrobacter hamburgensis (s... [more]
CH601_NITWN6.836e-2145.4560 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH60_GRABC8.928e-2144.1460 kDa chaperonin OS=Granulibacter bethesdensis (s... [more]
CH60_ACEP38.928e-2146.4360 kDa chaperonin OS=Acetobacter pasteurianus (str... [more]
CH603_BRAJA8.928e-2144.5560 kDa chaperonin 3 OS=Bradyrhizobium japonicum GN... [more]
CH602_ROSDO8.928e-2145.2260 kDa chaperonin 2 OS=Roseobacter denitrificans (... [more]
CH602_ANADF8.928e-2149.0960 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]
CH60_WOLSU1.166e-2046.3060 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_CAMHC1.523e-2050.0060 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH60_WOLRE1.989e-2049.0960 kDa chaperonin OS=Wolinella recta GN=groL PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185333 ID=CN185333; Name=CN185333; organism=Citrus sinensis; type=EST; length=697bp
ATGTAGACCAAGAGTTATAACATTTAAGCTCGAGGAACACTGAACAGTAA
CAAATGTGAGTACCCGCAGAATTAGTATCAGACTGTGAAGGAGATGAGCA
AAATAAAATTTCTTTCACTCAAAAAGTTCAAAATCATTGCAATTGTACAT
CTAATTGCAAATTAATACGAGCCGTACTCTGGCAAGCTATCCTCACCAGA
ATCCATAAACTCTACTAAGTCGAGTAATTGAATTTACAAGAAGAAGAGAA
CCCAACGCTGTCAAACTGAAAGATAGTTGCTATAACGAAGTCAGAACCTT
ATTTGCTTGCCTCCCGTGACCTTGTTAATTAGCTTAGTATCCATATCCTG
AGTTGTCCATAGGGTTACCCGCAGGCATAGCGGGTTCAGGCTCCTTGATC
TCAACCACCACACAGTCGGACATCAAGAAGGTTTTTGCCACCGAGGAAGC
ATGCTCCAAGCAACATCTAACCACCTTGGTAGGATCAATAATTCCTGCAG
CCATTAGATCTTCGTAGTTTCCAGTTGCAGCATTGTATCCATATTTATGA
TTGTCACTTGAAAGCACCTTCTCGCTGACCACACTTCCATTAACACCGGC
ATTTATGGCAATTAATTTCAGTGGGTAGCACAGAGCTCTTTTAACAATAT
CTGCTCCAACCTTTTCTTCATCATTATCAAGGGTTTCCTTAATGGCA
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