CN185333

Overview
NameCN185333
Unique NameCN185333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:189..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = -2
Query:  340 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 669
            +EK+GA+I+ RA+  PLK IA NAG +  VV+  V +++N   G+NAATG Y D+  AGI+DP KV R  L++A SVA   L ++  V EIKE +PA PA +     G G
Sbjct:  434 DEKIGAEIILRAIKAPLKQIAENAGFDPGVVANNVENAENENTGFNAATGEYVDMFEAGIVDPAKVERVALQNAVSVASLLLTTEATVSEIKEDKPAAPAPDMGGMGGMG 543          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_DICDI (60 kDa heat shock protein, mitochondrial OS=Dictyostelium discoideum GN=hspA PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  373 KETLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMP 690
            K  +DN ++ +G  IV+ AL  P K IA NAGV GSVV  ++LS  + +YGYNA  G YE+++ AGIIDPTKVVR  L  A+SVA     ++ +VVEIK+  P P MP
Sbjct:  444 KIKMDNFDQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLSKRDFEYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKKDTPMPQMP 551          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  340 KETLDNDEEKVGADIVKRALCYPLKLIAINAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 690
            + T DND++K G DI++RAL  PL+ I  N G  +G+VV EKV S +   YG+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + ++ E +  MPA  P    G G
Sbjct:  428 RATADNDDQKTGIDIIRRALEEPLRQIVANTGTTDGAVVLEKVRSGEGD-YGFNARTEEYENLVDAGVVDPTKVTRSALENAASVASILLTTEAAITDLPEDKADMPAMPPGGMGGMG 544          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 46/106 (43.40%), Postives = 74/106 (69.81%), Query Frame = -2
Query:  367 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAG 675
            ND++K G +IV++AL  P + IAINAG +GS++  K+L  + + YG+++ TG Y +L++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMP G
Sbjct:  433 NDDQKTGVEIVRKALSAPARQIAINAGEDGSIIVGKILEKEQYSYGFDSQTGEYVNLISKGIIDPTKVVRAAIQNAASVAALLITTEAMVAELPKKNAAAPAMPGG 538          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_HYPNA (60 kDa chaperonin OS=Hyphomonas neptunium (strain ATCC 15444) GN=groL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = -2
Query:  340 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 675
            ND+EK G DIV++AL  P++ IA NAGV GSVV   +L++ +  YG+NA T  Y DL+A G+IDP KVVR  L++A+S+A   + ++  + E  + E A   G P    G G
Sbjct:  432 NDDEKAGIDIVRKALEAPIRQIAENAGVEGSVVVNTILNNKSRSYGFNAQTEEYGDLVAMGVIDPVKVVRSALQNAASIASLLITTEAGIAEAPKKESAGGGGMPGGMGGMG 543          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_DESDA (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=groL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = -2
Query:  340 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 675
            +D+E  G +I++RA+  PL+ IA+NAG  GS+V EKV    +  +G+NAATG YEDL+ AG+IDP KV R  L++A+SVA   L ++C + E  +PEP   A  P D  G G
Sbjct:  433 DDDELAGVNIIRRAIEEPLRQIALNAGFEGSIVVEKVREGKDG-FGFNAATGEYEDLIKAGVIDPKKVTRTALQNAASVASLLLTTECAIAE--KPEPKKDAAMP-DMGGMG 540          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_AQUAE (60 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  391 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 678
            DN ++++G DI+K+A+  PLK IA NAG +GSVV EKV+     K   +G+NAATG Y D+  AGIIDPTKVVR  +E+A+SVA T L ++ ++ ++ E
Sbjct:  432 DNHDQQLGIDIIKKAVRTPLKQIAYNAGYDGSVVLEKVIELGKEKGVSWGFNAATGEYVDMYEAGIIDPTKVVRTAIENAASVAGTMLTAEALIADLPE 530          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH604_RHIEC (60 kDa chaperonin 4 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL4 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = -2
Query:  355 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 675
            ND+++VG +IV+RAL  P + IA NAG  GSVV  K+    +  YG+NA TG + DL A G+IDP KVVR  L+ ASS+A   + ++ ++ E   K+  PAMPAG  MD
Sbjct:  433 NDDQRVGVEIVRRALEAPARQIAENAGAEGSVVVGKLREKSDFSYGWNAQTGEFGDLYAQGVIDPAKVVRTALQDASSIAGLLVTTEAMIAEKPKKDAPPAMPAGAGMD 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = -2
Query:  379 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 675
            N EE+VGA+IV RAL  PL  IA NAG+ GSVV EKVL  +   +G++A TG Y D+ A GI+DP KVVR  L++A+S+A  +L ++ +VVE  EP+PA
Sbjct:  433 NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEM-PFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAIVVEKPEPKPA 530          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_ERYLH (60 kDa chaperonin 2 OS=Erythrobacter litoralis (strain HTCC2594) GN=groL2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = -2
Query:  340 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 678
            +ND++  G DIV++A+  P++ IA NAG +G+V+S  +L  DN   G+NAAT  YEDL+ AG+IDPTKVVR  L+ A+SVA   + ++  + E+  PE     G   D  G G
Sbjct:  432 ENDDQTRGIDIVRKAIVAPVRQIATNAGHDGAVISGNLLREDNESQGFNAATDTYEDLVKAGVIDPTKVVRVALQDAASVAGLLITTEAAISEV--PEDKSSGGGMPDMGGMG 542          
The following BLAST results are available for this feature:
BLAST of CN185333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_NITSB1.989e-2047.2760 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_DICDI1.989e-2050.9360 kDa heat shock protein, mitochondrial OS=Dictyo... [more]
CH60_CHLP81.989e-2044.9260 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]
CH601_NITHX1.989e-2043.4060 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]
CH60_HYPNA2.598e-2044.6460 kDa chaperonin OS=Hyphomonas neptunium (strain ... [more]
CH60_DESDA2.598e-2047.3260 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_AQUAE2.598e-2050.5160 kDa chaperonin OS=Aquifex aeolicus GN=groL PE=3... [more]
CH604_RHIEC2.598e-2047.7160 kDa chaperonin 4 OS=Rhizobium etli (strain CFN ... [more]
CH602_SYNJB2.598e-2053.5460 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH602_ERYLH2.598e-2044.2560 kDa chaperonin 2 OS=Erythrobacter litoralis (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185333 ID=CN185333; Name=CN185333; organism=Citrus sinensis; type=EST; length=697bp
ATGTAGACCAAGAGTTATAACATTTAAGCTCGAGGAACACTGAACAGTAA
CAAATGTGAGTACCCGCAGAATTAGTATCAGACTGTGAAGGAGATGAGCA
AAATAAAATTTCTTTCACTCAAAAAGTTCAAAATCATTGCAATTGTACAT
CTAATTGCAAATTAATACGAGCCGTACTCTGGCAAGCTATCCTCACCAGA
ATCCATAAACTCTACTAAGTCGAGTAATTGAATTTACAAGAAGAAGAGAA
CCCAACGCTGTCAAACTGAAAGATAGTTGCTATAACGAAGTCAGAACCTT
ATTTGCTTGCCTCCCGTGACCTTGTTAATTAGCTTAGTATCCATATCCTG
AGTTGTCCATAGGGTTACCCGCAGGCATAGCGGGTTCAGGCTCCTTGATC
TCAACCACCACACAGTCGGACATCAAGAAGGTTTTTGCCACCGAGGAAGC
ATGCTCCAAGCAACATCTAACCACCTTGGTAGGATCAATAATTCCTGCAG
CCATTAGATCTTCGTAGTTTCCAGTTGCAGCATTGTATCCATATTTATGA
TTGTCACTTGAAAGCACCTTCTCGCTGACCACACTTCCATTAACACCGGC
ATTTATGGCAATTAATTTCAGTGGGTAGCACAGAGCTCTTTTAACAATAT
CTGCTCCAACCTTTTCTTCATCATTATCAAGGGTTTCCTTAATGGCA
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