CN185333

Overview
NameCN185333
Unique NameCN185333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:189..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  346 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 675
            +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  433 DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = -2
Query:  346 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 675
            +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  433 DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_CLONN (60 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 56/121 (46.28%), Postives = 79/121 (65.29%), Query Frame = -2
Query:  346 AIKE----TLDNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 696
            AIKE    T DN E ++G  I++RAL  P++ IA NAG+ GSV+ +K+ +S++   G++A  G Y ++M  GI+DP KV R  L++A+SVA TFL ++CVV EI E  P MPA   M   G
Sbjct:  420 AIKEVEKLTDDNAEVRLGIAIIRRALEEPVRQIAANAGLEGSVIIDKIKNSEDG-IGFDALEGEYTNMMQKGIVDPAKVTRSALQNAASVASTFLTTECVVAEIPEKNP-MPAAPGMGGMG 538          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_BACFO (60 kDa chaperonin OS=Bacteroides forsythus GN=groL PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = -2
Query:  346 DNDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 678
            +N++E  G +IVKRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YEDL  AG++DP KV R  LE+A+S+A  FL ++CVV + KE  PA P    M   G
Sbjct:  432 ENEDETTGIEIVKRAIEEPLRQIVNNAGKEGAVVVQKVKEGTG-AFGYNARTDVYEDLSEAGVVDPAKVTRIALENAASIAGMFLTTECVVADKKEEAPAPPMNPGMGGMG 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH606_BRAJA (60 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN=groL6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 48/109 (44.04%), Postives = 74/109 (67.89%), Query Frame = -2
Query:  358 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAGNPM 675
            ND++K G +IV++AL  P + IAINAG +GSV+  K+L +  + YG+++ TG Y +L+  GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMP G  M
Sbjct:  433 NDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILENKTYAYGFDSQTGEYVNLVTKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGGM 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.787e-20
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = -2
Query:  337 IKETLD---NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 693
            +KE  D   + EE +GA+IV+ +L  PL  IA NAG NG+V++E V S   +  G+NAATG+Y D+ AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG P     + Y
Sbjct:  424 LKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGAPGMGGDFDY 544          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH60_PROVI (60 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groL PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  340 DNDEEKVGADIVKRALCYPLKLIAINAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 678
            DND++K G +I++RAL  PL+ I  N G  +G+VV E V + +   YG+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + +IKE  P MPA  P    G G
Sbjct:  432 DNDDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEHVKNGEGD-YGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEACITDIKENTPDMPAMPPGGMGGMG 544          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 56/110 (50.91%), Postives = 73/110 (66.36%), Query Frame = -2
Query:  343 DEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 672
            DEE  GA IV RAL  PLK IA NAG NG+V+SE+V   +    GYNAA+  Y D++AAGI+DP KV R  L++A+S+A   L ++C+VV+  E E A PAG P  +  Y
Sbjct:  434 DEELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKE-FNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKA-PAGAPGGDFDY 541          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_SALTO (60 kDa chaperonin 1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=groL1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 55/101 (54.46%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  367 EEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 669
            +E  GA IVK AL  PL+ IA+NAG+ G VV E V   +   +G NAATG Y DLMAAGIIDP KV R  L++ASS+A  FL ++ VV +  E  PA PAG
Sbjct:  433 DEATGAQIVKIALDGPLRQIAVNAGLEGGVVVEHVRGIEAG-HGLNAATGGYVDLMAAGIIDPAKVTRSALQNASSIAALFLTTEAVVADKPEKTPAAPAG 532          
BLAST of CN185333 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 46/112 (41.07%), Postives = 74/112 (66.07%), Query Frame = -2
Query:  340 NDEEKVGADIVKRALCYPLKLIAINAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 675
            ND++K G +IV++AL +P + IAINAG +GSV+  K+L  D + YG+++ +G Y D++  GIIDPTKVVR  +++A+SVA   + ++ ++ E+ +   A   G P    G G
Sbjct:  433 NDDQKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYSYGFDSQSGEYGDMVKKGIIDPTKVVRAAIQNAASVAALLITTEAMIAELPKKGNA-GGGMPPGGGGMG 543          
The following BLAST results are available for this feature:
BLAST of CN185333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DESVV5.787e-2044.5560 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH5.787e-2044.5560 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_CLONN5.787e-2046.2860 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH60_BACFO5.787e-2046.8560 kDa chaperonin OS=Bacteroides forsythus GN=groL... [more]
CH606_BRAJA5.787e-2044.0460 kDa chaperonin 6 OS=Bradyrhizobium japonicum GN... [more]
CH602_PROMP5.787e-2044.2660 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH60_PROVI7.558e-2045.6160 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]
CH601_SYNY37.558e-2050.9160 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH601_SALTO7.558e-2054.4660 kDa chaperonin 1 OS=Salinispora tropica (strain... [more]
CH601_RHOPB7.558e-2041.0760 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185333 ID=CN185333; Name=CN185333; organism=Citrus sinensis; type=EST; length=697bp
ATGTAGACCAAGAGTTATAACATTTAAGCTCGAGGAACACTGAACAGTAA
CAAATGTGAGTACCCGCAGAATTAGTATCAGACTGTGAAGGAGATGAGCA
AAATAAAATTTCTTTCACTCAAAAAGTTCAAAATCATTGCAATTGTACAT
CTAATTGCAAATTAATACGAGCCGTACTCTGGCAAGCTATCCTCACCAGA
ATCCATAAACTCTACTAAGTCGAGTAATTGAATTTACAAGAAGAAGAGAA
CCCAACGCTGTCAAACTGAAAGATAGTTGCTATAACGAAGTCAGAACCTT
ATTTGCTTGCCTCCCGTGACCTTGTTAATTAGCTTAGTATCCATATCCTG
AGTTGTCCATAGGGTTACCCGCAGGCATAGCGGGTTCAGGCTCCTTGATC
TCAACCACCACACAGTCGGACATCAAGAAGGTTTTTGCCACCGAGGAAGC
ATGCTCCAAGCAACATCTAACCACCTTGGTAGGATCAATAATTCCTGCAG
CCATTAGATCTTCGTAGTTTCCAGTTGCAGCATTGTATCCATATTTATGA
TTGTCACTTGAAAGCACCTTCTCGCTGACCACACTTCCATTAACACCGGC
ATTTATGGCAATTAATTTCAGTGGGTAGCACAGAGCTCTTTTAACAATAT
CTGCTCCAACCTTTTCTTCATCATTATCAAGGGTTTCCTTAATGGCA
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