CN185313

Overview
NameCN185313
Unique NameCN185313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185313_ssr725 microsatellite CN185313_ssr725:725..736. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6837 contig Csv1_Contig6837:443..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE_DROME (V-type proton ATPase subunit E OS=Drosophila melanogaster GN=Vha26 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.340e-31
Identity = 76/191 (39.79%), Postives = 125/191 (65.45%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ L ++ EP V+LRCR+ D  LV +VL +A E+Y  ++  +  E+ +D   +L               GGV + + +G+I   NTL++RLD++ ++ +PEIR  L
Sbjct:   36 EEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPAAVEQYKAQINQN-VELFIDEKDFL----------SADTCGGVELLALNGRIKVPNTLESRLDLISQQLVPEIRNAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE2_HUMAN (V-type proton ATPase subunit E 2 OS=Homo sapiens GN=ATP6V1E2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.898e-31
Identity = 78/191 (40.84%), Postives = 118/191 (61.78%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI  S   N +R+KVL+A++DL+S+++  A   +  +  D   Y+ LL  L++Q LLRL EP +++RCR  D  LVE+ ++ A  EY    Q H  E+ +D   YL            + +GGV V S + +I   NTL++RLD+  ++K+PEIR  L
Sbjct:   36 EEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKILMSTMRNQARLKVLRARNDLISDLLSEAKLRLSRIVEDPEVYQGLLDKLVLQGLLRLLEPVMIVRCRPQDLLLVEAAVQKAIPEYMTISQKH-VEVQIDKEAYL----------AVNAAGGVEVYSGNQRIKVSNTLESRLDLSAKQKMPEIRMAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE1_MOUSE (V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.898e-31
Identity = 75/193 (38.86%), Postives = 122/193 (63.21%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   36 EEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYL----------PEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE1_BOVIN (V-type proton ATPase subunit E 1 OS=Bos taurus GN=ATP6V1E1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.898e-31
Identity = 75/193 (38.86%), Postives = 122/193 (63.21%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   36 EEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYL----------PEEIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE1_MACFA (V-type proton ATPase subunit E 1 OS=Macaca fascicularis GN=ATP6V1E1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31
Identity = 75/193 (38.86%), Postives = 122/193 (63.21%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   36 EEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDV---DVQIDQESYL----------PEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE1_HUMAN (V-type proton ATPase subunit E 1 OS=Homo sapiens GN=ATP6V1E1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.648e-31
Identity = 75/193 (38.86%), Postives = 122/193 (63.21%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   36 EEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDV---DVQIDQESYL----------PEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE1_RAT (V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.683e-31
Identity = 75/193 (38.86%), Postives = 122/193 (63.21%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL              +GGV + + D KI   NTL++RLD++ ++ +PE+R  L
Sbjct:   36 EEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQGLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDLEAYL----------PEDIAGGVEIYNGDRKIKVSNTLESRLDLIAQQMMPEVRGAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE_MANSE (V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.481e-30
Identity = 78/191 (40.84%), Postives = 121/191 (63.35%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            EEFNIEK +LV+ ++ KI + YE+KEKQVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K +  V +D   Y  LL  LIVQ+L +L EP V LR R+ D  LVES+L  A+++Y  K++     + +D+  +L           P   GG+ + +  G+I   NTL++RL+++ ++ LPEIR  L
Sbjct:   36 EEFNIEKGRLVQQQRLKIMEYYEKKEKQVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIK-KDVVLKIDNENFL----------PPDTCGGIELIAAKGRIKISNTLESRLELIAQQLLPEIRNAL 215          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE2_MOUSE (V-type proton ATPase subunit E 2 OS=Mus musculus GN=Atp6v1e2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.934e-30
Identity = 77/188 (40.96%), Postives = 116/188 (61.70%), Query Frame = -2
Query:  213 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR 776
            EEFNIEK +LV+ ++ KI   +E+KEKQ+E +KKI+ S   N +RI VL+A+D+L+  +++ A   +  +  D   Y+ LL  L++Q+LLRL EP +++RCR  D HLVES +  A  +Y +  Q H  E+ VD   +L            + +GGV V S D KI   NTL++RL++   +K+PEIR
Sbjct:   36 EEFNIEKGRLVQTQRLKIMDYFEKKEKQIEQQKKIQLSTMRNQARITVLRARDNLILELLKDAKMRLSRIVSDEEIYQDLLDKLVLQALLRLLEPVMIVRCRPQDLHLVESAVLRAIPQYMRLCQKH-LEVQVDQTEHL----------PSNAAGGVEVYSSDQKIKVSNTLESRLNLAAMQKMPEIR 212          
BLAST of CN185313 vs. ExPASy Swiss-Prot
Match: VATE_DICDI (V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.614e-27
Identity = 66/191 (34.55%), Postives = 118/191 (61.78%), Query Frame = -2
Query:  204 EEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 776
            +EF  EK ++ + EK KI +EYE+K+K +E++KKI  S +LN SR+ VL+ +++ + ++++ A K++  +S D + Y+ +LK LI Q  ++L E  + +  RK+D  L+E     A  +Y + +     ++ VD   +L           P+C GGV++++ +G+I+C+NTLD+RL++ F +  P IR QL
Sbjct:   34 QEFTSEKGRIFQNEKIKIIKEYEKKQKLIEVQKKINLSNELNKSRLSVLKVREECLRDVIKEAQKKLATISDDKDKYQTILKNLIYQGFVKLNENKIQVVGRKEDAGLLEKATTEAAAQYKKNVG-KSIDVSVDKERFL-PQGPKSDYNGPTCCGGVILSALEGRIICKNTLDSRLEICFDQLTPVIRTQL 222          
The following BLAST results are available for this feature:
BLAST of CN185313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_DROME1.340e-3139.79V-type proton ATPase subunit E OS=Drosophila melan... [more]
VATE2_HUMAN3.898e-3140.84V-type proton ATPase subunit E 2 OS=Homo sapiens G... [more]
VATE1_MOUSE3.898e-3138.86V-type proton ATPase subunit E 1 OS=Mus musculus G... [more]
VATE1_BOVIN3.898e-3138.86V-type proton ATPase subunit E 1 OS=Bos taurus GN=... [more]
VATE1_MACFA6.648e-3138.86V-type proton ATPase subunit E 1 OS=Macaca fascicu... [more]
VATE1_HUMAN6.648e-3138.86V-type proton ATPase subunit E 1 OS=Homo sapiens G... [more]
VATE1_RAT8.683e-3138.86V-type proton ATPase subunit E 1 OS=Rattus norvegi... [more]
VATE_MANSE1.481e-3040.84V-type proton ATPase subunit E OS=Manduca sexta GN... [more]
VATE2_MOUSE1.934e-3040.96V-type proton ATPase subunit E 2 OS=Mus musculus G... [more]
VATE_DICDI2.614e-2734.55V-type proton ATPase subunit E OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185313 ID=CN185313; Name=CN185313; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTGAGCACCAAATCCAAGAACAGATTCACTGATTTTCACCATA
AAGATATTCTGCAAACATTATAATTTAAAATATGCAAACAAACAGGAAAT
AATAAATTTTATGGTCAATAACTAAACTTAAAAACTTCGGACATGAATAA
TCAGAGGGTGACAAACAATTCAAATTAACTCATCATGCAGCAACCTGACT
GACGAGCTGCTTCCGGATCTCAGGAAGTTTTTTACGGAACACAACATCCA
ACCGTGCATCAAGGGTATTCTCACATACTATCTTCCCATCTCGAGAAGCC
ACCACGACACCTCCTGAGCAGGATGGACCATGGGCATTATGATGGCCAGG
GCCAGGCGGAAGATAGATGTGATGATCCACAATTATCTCTGGTGGGTGAA
CCTGCAATTTCTGTGCATATTCCTCTTTTGCTGACTCCAAAACAGACTCC
ACCAAATGATGGTCATCTTTGCGGCATCTCAGTAACACAGCTGGCTCTTT
CAGCCTGAGCAAACTCTGAACAATAAGACCCTTCAAAAGCTTCTTATATG
AATTGTGATCGCGACTCACATTCAAAACCTCCTTTGATGCTGCCTCCATC
ATATTACTGACCAAATCATCCTGAGCTTGAAGAACTTTGATCCGAGAAGC
ATTCAGCTGCATGGAGTACTCAATCTTCTTTCTGATTTCGACTTGCTTCT
CTTTCCGCTCGTACTCTTGTCTGATCTTCTTCTTCTCTGCTTCCACCAGC
TGCAACTTCTCTATGTTGAATTCTTCT
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