CN185309

Overview
NameCN185309
Unique NameCN185309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3018 contig Csv1_Contig3018:186..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.525e-32
Identity = 69/196 (35.20%), Postives = 109/196 (55.61%), Query Frame = -3
Query:  189 STGLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 776
            +TG GA +N AK   G + A+F             + +GA+RII VD N  +F +AK  G TE ++P+D++KP+QQV+ DM N G D + E TG+ + + +A    H   GV V+VG          +     + RTLKG+  G +K + ++P +V  Y  K+  ++  ITHT+   ++N+A  LM  G+ IRC++
Sbjct:  178 ATGFGAAINSAKVSPGSTCAVFGLGGVGLSVIMGCKAAGAARIIAVDTNKDKFAKAKTVGATECIDPQDFEKPIQQVLFDMMNDGADFTFEVTGNPETVETALASCHKDHGVCVIVGSLASWIQLNINSHLFFSGRTLKGSVLGGWKTKEEIPKLVSDYTAKKFNLDPLITHTLTLDKVNEAIQLMKNGQCIRCVL 373          
BLAST of CN185309 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.301e-18
Identity = 59/196 (30.10%), Postives = 97/196 (49.49%), Query Frame = -3
Query:  189 GLGATVNVAKPKKGQSVAIFXXXXXXXXXXXXARVSGASRIIGVDLNPSRFNEAKKFGVTEFVNPKDYDKPVQQVIADMTNG-GVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNER-TLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 770
            GLGA VN     +G SVA+             AR++GA++II VD +  +   A + G T  VN  + D  V + +  +T G G D  ++  G  +    AF    D  G  VLVGVP  D   +   ++  +    LK +++G+  P  D P +++ ++   L ++KF+T  +   ++ KAF  M AGE +R ++
Sbjct:  166 GLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKIIAVDRDAKKLEWATELGATHTVNATETD--VVEAVQALTGGFGADVVIDAVGRPETWKQAFYA-RDLAGTVVLVGVPTPDMRLEMPLLDFFSRGGALKSSWYGDCLPERDFPVLIDLHLQGRLPLDKFVTERISLDDVEKAFHTMHAGEVLRSVV 358          
The following BLAST results are available for this feature:
BLAST of CN185309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ADH6_PERMA3.525e-3235.20Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
FADH_AMYME1.301e-1830.10NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185309 ID=CN185309; Name=CN185309; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTATATGTAGAAAACACAACTCTCTTGAAAGCCCT
CTTTCAGCAAGTCATCAAACATACAGCATAAATTACTTATTCTCGGGGTA
ATATATAACTTGGAAAATTATGTGATCATCTTCATTCTGCCTCCATTAGA
TTGATCAGCAACAGCAGACACATCTAACCATCCATGCGAATGATGCACCT
AATGCTTTCTCCCGCAAGCATGAGGTCAAATGCCTTGTTTATCTCCGAGA
AGGGCACAGTGTGAGTGATGAATTTCTCGACCTCCAACTCCTTGTTCATG
TATTTTTCAACAACAGAAGGAAGATCAGAGCGAGGTTTGTAGTTGCCAAA
GAAGGTACCCTTAAGAGTCCTCTCATTAAGCAGATTCATGGGATGAGTCT
TGAATGCATCATCTTTGTTTGGCACACCCACAAGCACAGCAACACCCCAA
CCATCGTGAACGCATTCAAATGCTGAAATCATGGCCTGGACGCTTCCAGT
ACATTCAACACTTCTATCCACTCCACCATTGGTCATGTCAGCAATCACCT
GTTGAACAGGTTTGTCATAATCTTTTGGATTCACAAACTCGGTAACCCCA
AACTTCTTGGCTTCATTGAATCTGCTTGGGTTCAAATCAACACCAATGAT
CCTGGAAGCCCCTGATACCCTTGCCCCTTCGGCAGCAGCGAGGCCAACTG
CACCCAATCCAAAAATGGCAACAGACTGGCCCTTCTTCGGTTTGGCGACA
TTAACAGTAGCCCCCAAACCTGTGGAGA
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