EY666545

Overview
NameEY666545
Unique NameEY666545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_PROM9 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9312) GN=petC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.207e-56
Identity = 98/176 (55.68%), Postives = 123/176 (69.89%), Query Frame = 3
Query:  177 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFRPGEAPWW 704
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++E+  V+   W+ETDFR  E PWW
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWW 177          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_PROM0 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=petC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.577e-56
Identity = 99/176 (56.25%), Postives = 123/176 (69.89%), Query Frame = 3
Query:  177 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFRPGEAPWW 704
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++E+  V+   W+ETDFR  E PWW
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEVGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWW 177          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_PROM2 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9215) GN=petC PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.059e-56
Identity = 99/176 (56.25%), Postives = 122/176 (69.32%), Query Frame = 3
Query:  177 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFRPGEAPWW 704
            T + +  VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH ++E+  V+   W+ETDFR  E PWW
Sbjct:    2 TQLSSKDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGGIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWW 177          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_PROMP (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=petC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.513e-56
Identity = 97/176 (55.11%), Postives = 123/176 (69.89%), Query Frame = 3
Query:  177 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFRPGEAPWW 704
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL +H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +V++  V+   W+ETDFR  E PWW
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLASHQAGDRSLVQGLKGDPTYLIVNSEGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWW 177          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_PROM5 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9515) GN=petC PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.588e-56
Identity = 97/176 (55.11%), Postives = 122/176 (69.32%), Query Frame = 3
Query:  177 TSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFRPGEAPWW 704
            T + ++ VP MG+RQ MNLL  G  +      L P A +F P   G  GGGT+AKD +GN +    WL  H  GDR+L +GLKGDPTYL+V  +  +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +V++  V+   W+ETDFR  E PWW
Sbjct:    2 TQLSSNDVPSMGRRQFMNLLTFGTATGVALGALYPVANYFMPLRAGGGGGGTSAKDELGNPVTKTGWLANHQAGDRSLVQGLKGDPTYLIVNSEGDIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDVDDDAVLVKQWSETDFRTNENPWW 177          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRIA_BIGNA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Bigelowiella natans GN=petC PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.130e-54
Identity = 106/211 (50.24%), Postives = 127/211 (60.19%), Query Frame = 3
Query:   75 KGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKD-KTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFRPGEAPWW 704
            +G +  P  +F    +R           K   QA     D VPDMGKR+LMN L+L AV+         Y  +F PP  G  GG   A DA+GN + A  W  +H    R L +G+KGDPTYL+V  D  TL SYG+NA+CTHLGCVVPW++A NKF CPCHGSQY   G VVRGPAP  L LAH   +NGK++  PWTETDFR GE PWW
Sbjct:   41 RGKIAAPRTSFQNAVSRVSRNQLPSSSRKAVAQAFLSNPDMVPDMGKRKLMNNLVLAAVAPVVASAGGCYLYYFYPPQTGGGGGAVGALDALGNPVSAESWFKSHKKNARDLVQGIKGDPTYLIVNDDGSTLNSYGLNAICTHLGCVVPWDAASNKFKCPCHGSQYAPDGHVVRGPAPRPLQLAHVEDDNGKILLSPWTETDFRTGEKPWW 251          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJB (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. GN=petC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.454e-43
Identity = 84/161 (52.17%), Postives = 103/161 (63.98%), Query Frame = 3
Query:  201 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFR 683
            P M +R L+N LL G+V +     L P   +F PP  G  G G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN  EN F CPCHGSQY   G+V+RGPAP SL L  A V+   V F PW   DFR
Sbjct:   11 PPMSRRVLLNALLSGSVGVVVVGALYPVVKYFIPPSAGGGGEGLIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNVGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_SYNJA (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain JA-3-3Ab) GN=petC PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.923e-43
Identity = 83/161 (51.55%), Postives = 103/161 (63.98%), Query Frame = 3
Query:  201 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFR 683
            P M +R  +N LL  +V +     L P   +F PP  G AG G  A+DA+G  I  ++ L TH   DR L +GLKGDPTY+V++    +A+YG+NAVCTHLGCVVPWN+ EN F CPCHGSQY   G+V+RGPAP SL L  A V+   V F PW   DFR
Sbjct:   11 PPMSRRVFLNALLSSSVGVVVVGTLYPVVKYFIPPSSGGAGEGVIAQDALGKPISVSELLATHAATDRVLAQGLKGDPTYIVIDNG-AVANYGLNAVCTHLGCVVPWNAGENLFKCPCHGSQYAANGKVIRGPAPRSLELVSATVDGDNVRFSPWQGPDFR 170          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRI_GLOVI (Cytochrome b6-f complex iron-sulfur subunit OS=Gloeobacter violaceus GN=petC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.937e-38
Identity = 80/168 (47.62%), Postives = 101/168 (60.12%), Query Frame = 3
Query:  189 ADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK---GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFR 683
            A  +P M +RQL++ +  GA++  T   L P   +F PP     G G  AKD  G DI  +  L    PG+  LT GL    GD TY+V+   K +A++GINAVCTHLGCVVPW++   +F CPCHGS YN  G + RGPAP  LAL  A V + KV+  PWTE DFR
Sbjct:    6 AQEIP-MSRRQLLSFVTGGAIAATTAATLYPVVLYFLPPSTAGGGEGVAAKDKEGKDISVSKLLAAATPGEPVLTLGLDVNGGDATYIVINDQKEIANFGINAVCTHLGCVVPWDNGAKQFKCPCHGSVYNADGGLERGPAPQPLALVKATVSDDKVLIAPWTEQDFR 172          
BLAST of EY666545 vs. ExPASy Swiss-Prot
Match: UCRIA_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=petC1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.937e-38
Identity = 79/169 (46.75%), Postives = 98/169 (57.99%), Query Frame = 3
Query:  201 PDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPG-LGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFFPWTETDFRPGEAPWW 704
            P   +RQL+N L    V++           FF PP   G AGGG  AKD +GN I A+  L    PG R L  GL GDPTYL+V++D +L S GI   CTHLGC  PWN  + +F CPCHGS+Y+  G V RGPAPL L +    V + ++   PWT+ D R GE PWW
Sbjct:   10 PSYSRRQLLNFLAGTTVAVTASAGAYAMGKFFVPPAEKGGAGGGIIAKDVLGNPIPASQIL-AEAPGTRALVAGLAGDPTYLIVKEDGSLDSIGIVDSCTHLGCTFPWNGNDQEFQCPCHGSRYHPDGSVARGPAPLPLKIVQVAVVDDQIFISPWTDLDPRTGEKPWW 177          
The following BLAST results are available for this feature:
BLAST of EY666545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_PROM91.207e-5655.68Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM01.577e-5656.25Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM22.059e-5656.25Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMP3.513e-5655.11Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROM54.588e-5655.11Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRIA_BIGNA1.130e-5450.24Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNJB4.454e-4352.17Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNJA9.923e-4351.55Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_GLOVI1.937e-3847.62Cytochrome b6-f complex iron-sulfur subunit OS=Glo... [more]
UCRIA_SYNY31.937e-3846.75Cytochrome b6-f complex iron-sulfur subunit 1 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-016-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666545 ID=EY666545; Name=EY666545; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGTTCTCCACAATGGCTTCCTCCTCTTCTCTCTCCTCAGCA
ACTCCTTCTCAGCTATGCTCAAGCAAGGGTGGTATGTTCTGTCCATCAAG
AGCTTTTCTTGTGAAACCAGCAAGGACCCAGATGGTGACAAAGAATCCAA
TGGGAATGAAGATCAAGTGCCAGGCTACAAGTATTCCAGCTGATAGAGTG
CCTGATATGGGCAAGAGGCAGCTCATGAATTTGCTTCTCTTGGGTGCTGT
TTCTCTTCCCACTGGATTTATGTTGGTTCCTTATGCGACCTTCTTTGCCC
CACCTGGTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATGCCATT
GGCAATGACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCTGGGGA
CCGAACCCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGG
AAAAAGACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCACTCAC
CTTGGATGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATCTGTCC
CTGCCACGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGGGCCTG
CTCCATTGTCATTGGCATTGGCTCATGCCAACGTTGAAAATGGTAAGGTA
GTCTTCTTTCCATGGACGGAAACAGATTTCAGACCTGGTGAAGCTCCATG
GTGGGGCTTAAACTTGGTTCCGGGGCCTGTGCTTTCAATATTCAAGTTTT
GGCCGGTCGGATTGCTTTGCCGGTACTCCATAAACAACCGGAACCGGACA
TTGCTTATCTTAATGAAACTTTCCAAATGGAGAGGTCCTTCGCTTGAAAA
CGGGCATCATGCCAACGCTTGGACATCTTGACAAATTTTTCCTATAAGCA
TAATTATTGGGAGACTTTAAAG
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