DC887783

Overview
NameDC887783
Unique NameDC887783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.061e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3 
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTY 422
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72
[Close]
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.979e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 3 
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 425
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC  T V
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLV 74
The following BLAST results are available for this feature:
BLAST of DC887783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RS37_YEAST1.061e-1265.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RS27A_DICDI8.979e-1258.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887783 EIC Citrus sinensis cDNA clone EIC0876 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887783 ID=DC887783; Name=DC887783; organism=Citrus sinensis; type=EST; length=582bp
TAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGAC
AATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCA
GCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCG
ACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGT
GGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGAT
CAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGG
TCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCT
GAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTG
CGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGAT
CGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGG
TTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATAT
ACTTGTTTGCTTGAGCGTTTTAATTAAGTTGA
back to top