DC887783

Overview
NameDC887783
Unique NameDC887783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    9 TGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.012e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 446
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.012e-28
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAGGD 446
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.167e-27
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    9 TGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.793e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 3
Query:   12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 200
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.365e-26
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 437
            LAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.422e-25
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 440
            LAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.082e-25
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAG 440
            LAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_ASPOF (40S ribosomal protein S27a OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.515e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVLQFYKVDD+GKV RLRKECPNAECGAGTFMANH DRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRHYCGKCGLTYVYQK 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.995e-24
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    9 TGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
The following BLAST results are available for this feature:
BLAST of DC887783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_LEIMA3.629e-2992.65Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
RS27A_SOLTU4.012e-2896.4940S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC4.012e-2896.4940S ribosomal protein S27a OS=Solanum lycopersicum... [more]
UBIQ_LEITA1.167e-2789.71Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIQ_LUMTE5.793e-2795.24Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RS27A_LUPAL8.365e-2696.3040S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH5.422e-2592.7340S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH7.082e-2590.9140S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]
RS27A_ASPOF3.515e-2494.3440S ribosomal protein S27a OS=Asparagus officinali... [more]
UBIL_NPVOP5.995e-2477.94Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]

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Properties
Property NameValue
Genbank descriptionDC887783 EIC Citrus sinensis cDNA clone EIC0876 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887783 ID=DC887783; Name=DC887783; organism=Citrus sinensis; type=EST; length=582bp
TAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGAC
AATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCA
GCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCG
ACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGT
GGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGAT
CAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGG
TCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCT
GAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTG
CGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGAT
CGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGG
TTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATAT
ACTTGTTTGCTTGAGCGTTTTAATTAAGTTGA
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