DC887783

Overview
NameDC887783
Unique NameDC887783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.975e-23
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    9 TGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_HORVU (40S ribosomal protein S27a OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.657e-23
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 3
Query:  276 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 437
            LAVLQFYKVDD+ GKV RLRKECPNA+CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 3
Query:  276 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 437
            LAVLQFYKVDD+ GKV RLRKECPN +CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 3
Query:  276 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 437
            LAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.633e-21
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 437
            LAVLQFYKVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_DAUCA (40S ribosomal protein S27a (Fragment) OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.528e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGK 407
            LAVLQFYKVD+SGKVQRLRKECPN ECGAGTFMANHFDRHYCGK
Sbjct:   24 LAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRHYCGK 67          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_CHICK (40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 7.584e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_HUMAN (40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_CAVPO (40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_BOVIN (40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.904e-19
Identity = 38/53 (71.70%), Postives = 47/53 (88.68%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
The following BLAST results are available for this feature:
BLAST of DC887783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIL_NPVAC2.975e-2375.00Ubiquitin-like protein OS=Autographa californica n... [more]
RS27A_HORVU8.657e-2391.0740S ribosomal protein S27a OS=Hordeum vulgare GN=M... [more]
RS27A_ORYSJ4.296e-2289.2940S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE4.296e-2289.2940S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
R27AA_ARATH1.633e-2181.4840S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]
RS27A_DAUCA1.528e-1995.4540S ribosomal protein S27a (Fragment) OS=Daucus ca... [more]
RS27A_CHICK7.584e-1971.7040S ribosomal protein S27a OS=Gallus gallus GN=RPS... [more]
RS27A_HUMAN9.904e-1971.7040S ribosomal protein S27a OS=Homo sapiens GN=RPS2... [more]
RS27A_CAVPO9.904e-1971.7040S ribosomal protein S27a OS=Cavia porcellus GN=R... [more]
RS27A_BOVIN9.904e-1971.7040S ribosomal protein S27a OS=Bos taurus GN=RPS27A... [more]

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Properties
Property NameValue
Genbank descriptionDC887783 EIC Citrus sinensis cDNA clone EIC0876 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887783 ID=DC887783; Name=DC887783; organism=Citrus sinensis; type=EST; length=582bp
TAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGAC
AATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCA
GCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCG
ACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGT
GGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGAT
CAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGG
TCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCT
GAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTG
CGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGAT
CGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGG
TTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATAT
ACTTGTTTGCTTGAGCGTTTTAATTAAGTTGA
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