DC887783

Overview
NameDC887783
Unique NameDC887783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    9 TGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_ICTPU (40S ribosomal protein S27a OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.206e-18
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVL++YKVD++GK+ RLR+ECP  ECGAG FMA+HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPADECGAGVFMASHFDRHYCGKCCLTYCFNK 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.882e-18
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.882e-18
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.882e-18
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_RAT (40S ribosomal protein S27a OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.882e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.882e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  276 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 434
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.385e-18
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG
Sbjct:    9 TGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of DC887783 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.440e-17
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 3
Query:    3 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 206
            TGK I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:    9 TGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of DC887783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RUB1_DESAN2.206e-1863.24NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RS27A_ICTPU2.206e-1871.7040S ribosomal protein S27a OS=Ictalurus punctatus ... [more]
RUB2_ORYSJ2.882e-1861.76NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ2.882e-1861.76NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH2.882e-1861.76NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RS27A_RAT2.882e-1869.8140S ribosomal protein S27a OS=Rattus norvegicus GN... [more]
RS27A_MOUSE2.882e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
NEDD8_DROME8.385e-1857.35NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]
RUB2_ARATH2.440e-1760.29NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_CAEEL2.440e-1758.82NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC887783 EIC Citrus sinensis cDNA clone EIC0876 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887783 ID=DC887783; Name=DC887783; organism=Citrus sinensis; type=EST; length=582bp
TAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGAC
AATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCA
GCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCG
ACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGT
GGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGAT
CAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGG
TCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCT
GAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTG
CGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGAT
CGAGATTAGGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGG
TTTTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATAT
ACTTGTTTGCTTGAGCGTTTTAATTAAGTTGA
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