EY666544

Overview
NameEY666544
Unique NameEY666544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_ACAM1 (NAD(P)H-quinone oxidoreductase subunit N OS=Acaryochloris marina (strain MBIC 11017) GN=ndhN PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.887e-17
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            +++  +E+  A+ IY P E                    +SA G+GD  +  T V+ V P H+GK  I  ++ PP V Y+L  LPP AKGL +W+ + K L+K EL +L+ +    P+++V+ E G  R F
Sbjct:    9 KFIRTIEQSGAVGIYVPSEGGFEGRYKRRLRATGYLTLFVSAPGMGDLASYFTDVHGVRPPHLGKNQIRTYFLPPFVTYQLENLPPQAKGLALWLYDGKRLAKQELAYLSAITASEPRLKVVVELGGARSF 139          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_MICAN (NAD(P)H-quinone oxidoreductase subunit N OS=Microcystis aeruginosa (strain NIES-843) GN=ndhN PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.175e-16
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  215 WLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            ++ D+E++ A+ +Y P E                    ++ARGLGD    LT ++ V P H+GK+ I R       ++ PP   Y+L  LPP +KGLV+WIIE+ VLS  E Q+L  L    P+++ + E G  R F
Sbjct:   10 FIRDLEQYGALGVYAPLEGGYEGRYQRRLRATGYNVLHITARGLGDLSAYLTGIHGVRPPHLGKKNIGREAAVGPVYFIPPIATYQLENLPPKSKGLVIWIIESFVLSSEEKQYLINLSQQEPRLKFVLELGGERYF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_SYNP2 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhN PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.617e-16
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  215 WLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIA--------RWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            ++  VEK  A+A+Y P E                   +L+ARGLGD    LT+ + + P H+GK+ IA        R+Y P    Y+L  LP  +KG+++WIIE  VLS+ E ++L  L    P+++V+ E G  R+F
Sbjct:   10 FIRTVEKSGAVAVYAPLEGGFEGRYVRRLRCSGYSVVNLTARGLGDVAAYLTQYHGIRPPHLGKKDIAGSGAAVGLRYYVPGIASYQLENLPQKSKGIILWIIEGFVLSRQEQEYLVSLTQDNPQIKVVVEMGGDRQF 147          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_SYNP6 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndhN PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 50/138 (36.23%), Postives = 68/138 (49.28%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARW-------YFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            ++L  +E+  A+A+Y P E                     SARGLGDP   L  ++ V P H+GKQ I          Y  P V Y L  LP +AKGLV+W++E  VLS  EL +   LP   P+++V+ E G  R F
Sbjct:    9 KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRPPHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLPQAEPRLKVVIEMGGDRGF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_SYNE7 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942) GN=ndhN PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.614e-16
Identity = 50/138 (36.23%), Postives = 68/138 (49.28%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARW-------YFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            ++L  +E+  A+A+Y P E                     SARGLGDP   L  ++ V P H+GKQ I          Y  P V Y L  LP +AKGLV+W++E  VLS  EL +   LP   P+++V+ E G  R F
Sbjct:    9 KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRPPHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLPQAEPRLKVVIEMGGDRGF 146          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_SYNY3 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechocystis sp. (strain PCC 6803) GN=ndhN PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15
Identity = 50/133 (37.59%), Postives = 71/133 (53.38%), Query Frame = 2
Query:  227 VEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIAR-------WYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKF 604
            +E   A+A+Y P E                    LSARGLGD E  L +V+ V PAH+GK+ IA+       ++  P   Y+L  LP  +KGLV+WI+E  +LS++E+Q L  L    PK++V+ E G  R F
Sbjct:   17 LENDGALAVYAPLEGGYEGRYQRRLRANGYASISLSARGLGDVEAYLMQVHGVRPAHLGKKNIAQEGAVGPIYFAQPIAGYQLENLPAQSKGLVLWILEGYILSQTEIQDLISLTKRVPKLKVVLEMGGDRVF 149          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_SYNJB (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. GN=ndhN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 41/129 (31.78%), Postives = 63/129 (48.84%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWR 598
            +++  +E+  A+AIY   E                    LS++G+GD  + LT+++ V PA +GK     ++FP  ++   A LPP AKGLV W  E  V S+ EL +L  L      V+ + E G  R
Sbjct:    9 KFVQQLEQAGALAIYVTPEGGSEGHYLRRLRGAGYEVVTLSSKGIGDLASYLTRIHGVRPATLGKSERRTYFFPALIEQYRATLPPKAKGLVFWFYEGHVFSQQELSYLVKLSREDKGVKFVVELGRER 137          
BLAST of EY666544 vs. ExPASy Swiss-Prot
Match: NDHN_SYNJA (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain JA-3-3Ab) GN=ndhN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 40/129 (31.01%), Postives = 62/129 (48.06%), Query Frame = 2
Query:  212 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWR 598
            +++  +E+  A+AI+   E                    LS++G+GD  + LT  + V PA +GK     +++P  ++   A LPP AKGLV W  E  VLS+ EL +L  L      V+ + E G  R
Sbjct:    9 KFVQQLEQCGALAIFVTPEGGSEGHYLRRLRGAGYEVVTLSSKGIGDLASYLTSSHGVRPATLGKSQRRTYFYPSLIEQYRATLPPKAKGLVFWFYEGHVLSRQELSYLVKLSQEDKGVKFVVELGRER 137          
The following BLAST results are available for this feature:
BLAST of EY666544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NDHN_ACAM16.887e-1733.59NAD(P)H-quinone oxidoreductase subunit N OS=Acaryo... [more]
NDHN_MICAN1.175e-1635.04NAD(P)H-quinone oxidoreductase subunit N OS=Microc... [more]
NDHN_SYNP22.617e-1634.78NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNP67.614e-1636.23NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNE77.614e-1636.23NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNY32.215e-1537.59NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNJB5.107e-1231.78NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNJA7.375e-1131.01NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-016-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666544 ID=EY666544; Name=EY666544; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGCTTGCTTGCACTATGGGACACCTGCCTCCATCAAAATCC
AACAGAAGCAGCAACCAACACGAAACTGGATGATGATGCAAGGATTGAGA
AGGAGAAATGGTAAGGCATCTAAAAGAGTTGGAGTGACCAATTGTAGTGG
TAATAGTGGCATTGAAATAGGGGACTTCATTGGAGGGGATCTGCTAAAAC
CTGATCTGGGGCGTTGGCTTTCAGATGTGGAGAAGCACAAAGCCATTGCC
ATTTATACACCACATGAGGGTGGATATGAGGGCCGTTATCTTAATCGTCT
CAGATACCTGGGCTACTACTTCCTTGACCTTAGTGCTCGCGGCCTTGGTG
ATCCTGAAACTACTCTCACTAAAGTTTACCCTGTTTGCCCTGCTCATGTA
GGAAAGCAACCAATAGCTAGGTGGTATTTCCCACCTGAAGTCGATTACAG
GCTTGCTGCATTGCCCCCAAGTGCAAAAGGGCTTGTAGTCTGGATAATTG
AAGCCAAGGTTCTGTCAAAGTCAGAGTTGCAGTTCCTTGCTTTGCTTCCT
ACACTCCGGCCAAAAGTCAGAGTCATTGCAGAGTGTGGAAACTGGAGGAA
GTTCTGTGGAAGCCTCTCAAAAAATTTGAGGACTGAATCAAGAAGGCGCA
GCTTGACCACCAAAAGAAAAAGCAAAAATTTGTACTGCCCCAAAAAAAGA
AGCAAATGATAAACTAGAACCCTGACTTGGAAAGATTAAAGCTATTTGCA
AAAAAAAAAGAAAAAAAAAAAGGGGGGCCGCTTCTAAAGGGCCAAGGTTA
CATACCCCGGGCCTGGGGGGAGATAGTCTCTTTATTGGGTCGCCCCGTAA
TTCAATTCCCGGGGCCGGCGTGTTAAAAGGAGCGGGAACGAGC
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