CN185299

Overview
NameCN185299
Unique NameCN185299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4344 contig Csv1_Contig4344:67..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.144e-34
Identity = 85/171 (49.71%), Postives = 106/171 (61.99%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL---EEGSR--EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            M+ LI ++NK+Q     LG              LP I             LE+IVG+DFLPRGSGIVTRRPL+LQL  L   ++GS+  E+ EFLH P   F DF+ +R+EI  +TDR TG+ K IS+ PI+L IYSP+VVNLTL+DLPG+TKV V  QP  I Q I  MV
Sbjct:    1 MDQLIPVINKLQDVFNTLGSDPL---------DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMV 162          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 82/182 (45.05%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  158 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL------------------HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +LI +VN++Q A + +G       +  L D LP I             LE+IVG+DFLPRG+GIVTRRPLVLQL                   K +  S E+ EFLH+P ++F +F  +R+EI  ET+ +TG+   ISSVPI+L IYSP+V+ LTL+DLPGLTKV V  QP  I + I  MV
Sbjct:    4 SLIKVVNQLQEAFSTVG-------VQNLID-LPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMV 177          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.785e-31
Identity = 84/206 (40.78%), Postives = 108/206 (52.43%), Query Frame = 2
Query:  155 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-----------------------------------------HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            E+LIS +NK+Q A   LG   ++         LP I             LE+IVG+DFLPRG+GIVTRRPLVLQL                                          + E+   E+ EFLH+P K+F +F  +RKEI  ETD+ TG    ISSVPI+L IYSP+V+ LTL+DLPGLTKV V  QP  I + I++M+
Sbjct:    3 EHLISTINKLQDALAPLGGGSQSPI------DLPQITVVGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRRPKKSEHAKVNQTANELIDLNINDDDKKKDESGKHQNEGQSEDNKEEWGEFLHLPGKKFYNFDEIRKEIVKETDKVTGANSGISSVPINLRIYSPHVLTLTLVDLPGLTKVPVGDQPPDIERQIKDML 202          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 4.944e-31
Identity = 79/179 (44.13%), Postives = 104/179 (58.10%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+GIVTRRPL+LQL H  +E  R            E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL I+SPNVVNLTL+DLPG+TKV V  QP  I   I  ++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELI 170          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.457e-31
Identity = 78/178 (43.82%), Postives = 104/178 (58.43%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            ME LI ++NK+Q     +G    A  +      LP IA            LES+VG+D LPRG+GIVTRRPL+LQL  ++   R            E+ +FLH   K +TDF  +R+EI++ET+R +G  K IS  PIHL I+SP+VVNLTL+DLPG+TKV V  QP  I   I  ++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIAVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVDPEDRRKTSEENGVDGEEWGKFLHTKNKIYTDFDEIRQEIENETERVSGNNKGISDEPIHLKIFSPHVVNLTLVDLPGITKVPVGDQPKDIELQIRELI 169          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.185e-30
Identity = 81/205 (39.51%), Postives = 114/205 (55.61%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--------------------------EEGSR-------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +E+LI  VNK+Q       D    S + TL   LP +A            LE++VG+DFLPRG+GIVTRRPLVLQL+ +                          E G++             E+ EFLHIP KRF DF  +++EI++ET R  G+ K IS +PI+L ++SP+V+NLTL+DLPG+TKV +  QP  I + I+N++
Sbjct:    4 LEDLIPTVNKLQ-------DVMYDSGIDTL--DLPILAVVGSQSSGKSSILETLVGRDFLPRGTGIVTRRPLVLQLNNISPNSPLIEEDDNSVNPHDEVTKISGFEAGTKPLEYRGKERNHADEWGEFLHIPGKRFYDFDDIKREIENETARIAGKDKGISKIPINLKVFSPHVLNLTLVDLPGITKVPIGEQPPDIEKQIKNLI 199          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 77/185 (41.62%), Postives = 103/185 (55.68%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+G+VTRRPL+LQL H   E  R                  E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL ++SPNVVNLTL+DLPG+TKV V  QP  I   I  ++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENGKFQSWRVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELI 176          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 79/192 (41.15%), Postives = 103/192 (53.65%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR-------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+GIVTRRPL+LQL H   E  R                         E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL I+SPNVVNLTL+DLPG+TKV V  QP  I   I  ++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVAPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELI 183          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.043e-29
Identity = 77/192 (40.10%), Postives = 103/192 (53.65%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR-------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+G+VTRRPL+LQL H   E  R                         E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL ++SPNVVNLTL+DLPG+TKV V  QP  I   I  ++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELI 183          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.758e-28
Identity = 74/184 (40.22%), Postives = 102/184 (55.43%), Query Frame = 2
Query:  116 PSPEIST*LREKM-ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR-----EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            PSP  ST     +  ++I +VNK+Q     LG     +        LP +             LE++VG+DFLPRG+ I TRRPLVLQL + +  +      E+ EF H+P  RF DF+ +R+EI+ ET+R  G  K ++   I L I SPNV+N+TL+DLPG+TKV V  QP  I   I  M+
Sbjct:   21 PSPSSSTTNAAPLGSSVIPIVNKLQDIFAQLGSQSTIA--------LPQVVVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKSRANGGSDDEWGEFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMI 196          
The following BLAST results are available for this feature:
BLAST of CN185299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
DYNA_DICDI2.144e-3449.71Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]
VPS1_SCHPO2.898e-3145.05Vacuolar protein sorting-associated protein 1 OS=S... [more]
VPS1_YEAST3.785e-3140.78Vacuolar protein sorting-associated protein 1 OS=S... [more]
DNM1L_HUMAN4.944e-3144.13Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DNM1L_DANRE6.457e-3143.82Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
DNM1_YEAST4.185e-3039.51Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
DNM1L_MOUSE9.323e-3041.62Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]
DNM1L_BOVIN2.713e-2941.15Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]
DNM1L_RAT6.043e-2940.10Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DRP3A_ARATH1.758e-2840.22Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185299 ID=CN185299; Name=CN185299; organism=Citrus sinensis; type=EST; length=652bp
TTGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGACCGTCGCCGTTT
CCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCA
TCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGAA
AATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGG
CTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCT
CTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGT
GTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCG
TTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGC
AGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATTT
TGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGTC
GTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCCT
AATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAGC
AGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTTC
GC
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