CN185299

Overview
NameCN185299
Unique NameCN185299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.681e-28
Identity = 76/187 (40.64%), Postives = 106/187 (56.68%), Query Frame = 2
Query:  107 LPPPSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS-----REYAEFLHI-PRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            LPP S    T L     ++I +VNK+Q     LG     +        LP +A            LE++VG+DFLPRG+ I TRRPL LQL + +  S      E+ EFLH  P +R  DF+ +R+EI+ ET+R +G  K +S +PI L I+SPNV++++L+DLPG+TKV V  QP  I   I  M+
Sbjct:    6 LPPSSASAVTPLGS---SVIPIVNKLQDIFAQLGSQSTIA--------LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLRLQLVQTKPSSDGGSDEEWGEFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPVGDQPSDIEARIRTMI 181          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.726e-28
Identity = 83/202 (41.09%), Postives = 104/202 (51.49%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL-------------------------EEGSRE-----------YAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            ME LI LVN++Q            + + + +  LP+I             LE+IVGKDFLPRG+GIVTRRPL+LQL  L                         E GS E           YAEFLHIP  +FTD   VR EI++ET R  G  K I+ +PI+L IYS  V+NLTLIDLPGLTK+ V  QP  I     +++
Sbjct:    1 MEQLIPLVNQLQDLVY--------NTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVTRRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLI 194          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 75/190 (39.47%), Postives = 102/190 (53.68%), Query Frame = 2
Query:  158 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR--------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +L+ ++NK+Q     +G             +LP I             LE++VG+DFLPRGSG+VTRRPLVLQL++    SR                          E+ EF H    RF +F  +++EI+ ET+R  G  K ISS PI L IYSP VV LTL+DLPGLT+VA+E QP  I + I++M+
Sbjct:  136 SLLPIINKLQENAALIGSE----------ITLPQIIVVGSQSSGKSSVLENLVGRDFLPRGSGLVTRRPLVLQLYQTTTTSRNNVNENEDEDEDDNYYDNDNDDNSLEEWGEFGHTGTNRF-NFQEIKEEIERETERIAGPNKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMI 314          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D A V K+I+D  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++
Sbjct:   34 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRRQEGEEWYGKISYQDCEKEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQ 168          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.306e-17
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ +  EG   Y +  +I   +   D A V K+I++  ++  G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKNEGEEWYGKITYIGFEENIKDPADVEKKIREAQNKIAGPGSGISEDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQ 166          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.930e-17
Identity = 68/171 (39.77%), Postives = 89/171 (52.05%), Query Frame = 2
Query:  146 EKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            E   NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KLE+      +   + R+   +D + V KEI +      G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R
Sbjct:   31 ESKGNLYSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLEKEGEWKGKVSFLDREIEISDASQVEKEISEAQIAIAGEGMGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIR 198          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.439e-16
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +E  + +    +   +  F D A V K+I++  D   G    IS   I L I S NV +LTLIDLPG+ +VAV+GQP++I   I+ ++R
Sbjct:   36 ALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIRSKEDEKWHGRISYQNHEEDFDDPAEVEKKIREAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIR 170          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +   +    D A V K+I++  D   G    IS   I L I SP V +LTLIDLPG+ +VAV+GQP++I   I+ +++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQNHEEEIEDPADVEKKIREAQDEMAGVGVGISDDLISLEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQ 166          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   + +  +   +    D + V K+I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I + I+ ++R
Sbjct:   33 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWHGKISYQDHEEEIEDPSDVEKKIREAQDEMAGVGVGISDDLISLEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIR 167          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_EPICO (Interferon-induced GTP-binding protein Mx OS=Epinephelus coioides GN=mx PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.662e-16
Identity = 54/136 (39.71%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D + V  +I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP+ I + I+ +++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYRGCEKELEDPSDVENKIREAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPEDIGKQIKGLIQ 166          
The following BLAST results are available for this feature:
BLAST of CN185299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
DRP3B_ARATH6.681e-2840.64Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
YB68_SCHPO8.726e-2841.09Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
DYNB_DICDI5.656e-2739.47Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
MX_PERFL1.824e-1741.91Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX_DICLA5.306e-1740.44Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MX1_SHEEP6.930e-1739.77Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MXB_DANRE3.439e-1640.44Interferon-induced GTP-binding protein MxB OS=Dani... [more]
MX_SINCH4.492e-1640.44Interferon-induced GTP-binding protein Mx OS=Sinip... [more]
MX_ONCMY4.492e-1639.71Interferon-induced GTP-binding protein Mx OS=Oncor... [more]
MX_EPICO7.662e-1639.71Interferon-induced GTP-binding protein Mx OS=Epine... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185299 ID=CN185299; Name=CN185299; organism=Citrus sinensis; type=EST; length=652bp
TTGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGACCGTCGCCGTTT
CCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCA
TCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGAA
AATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGG
CTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCT
CTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGT
GTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCG
TTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGC
AGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATTT
TGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGTC
GTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCCT
AATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAGC
AGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTTC
GC
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