CN185299

Overview
NameCN185299
Unique NameCN185299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_SOLSE (Interferon-induced GTP-binding protein Mx OS=Solea senegalensis GN=mx PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 53/135 (39.26%), Postives = 76/135 (56.30%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ +  +G     +  +   +    D A V K+I++   +  G    IS   I L I SP+V +LTLIDLPG+T+VAV GQP +I + I+ ++
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKNDGEGWQGKISYQDHEEEIQDPADVEKKIEEAQIQIAGVGVGISENMISLEIASPDVPDLTLIDLPGITRVAVHGQPVNIGEQIKKLI 165          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_PIG (Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa GN=MX1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 65/168 (38.69%), Postives = 84/168 (50.00%), Query Frame = 2
Query:  158 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL  EE   +            +D + V KE+        G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+++++
Sbjct:   40 NLYSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIK 204          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_PHOVI (Interferon-induced GTP-binding protein Mx1 OS=Phoca vitulina GN=MX1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 64/184 (34.78%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  116 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I +  + ++R
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNEDEWRGKVSYQDF----EMEISDPSEVEVEISKAQNVIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIR 201          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_CANFA (Interferon-induced GTP-binding protein Mx1 OS=Canis familiaris GN=MX1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL  E+  R    +     +  +D + V  EI    D   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I +  + ++R
Sbjct:   65 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLINEDEWRGKVSYQDTEME-ISDPSEVEVEINKAQDAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIR 199          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_OTABY (Interferon-induced GTP-binding protein Mx1 OS=Otaria byronia GN=MX1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 63/184 (34.24%), Postives = 89/184 (48.37%), Query Frame = 2
Query:  116 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIK 201          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_MACMU (Interferon-induced GTP-binding protein Mx1 OS=Macaca mulatta GN=MX1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 67/171 (39.18%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  158 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++         D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ ++R
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDEWRGKVSYQDY----EIEILDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPPDIGYKIKTLIR 203          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_EUMJU (Interferon-induced GTP-binding protein Mx1 OS=Eumetopias jubatus GN=MX1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 63/184 (34.24%), Postives = 89/184 (48.37%), Query Frame = 2
Query:  116 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIK 201          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLE---EGS---REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E    G    R   + LH P +       V +EI+   +   G    IS   I+L + SP V +LTLIDLPG+T+VAVE QP  I   I+ +++
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNVTQQLHNPSE-------VEREIRRAQNIIAGNGVGISHELINLEVTSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIK 249          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX2_HUMAN (Interferon-induced GTP-binding protein Mx2 OS=Homo sapiens GN=MX2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 66/182 (36.26%), Postives = 83/182 (45.60%), Query Frame = 2
Query:  110 PPPSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            PPP             NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L K    +               D   V KEI    +   G  + IS   I L I SP V +LT+IDLPG+T+VAV+ QP  I   I+ +++
Sbjct:   72 PPPGNRSQPRAMGPENNLYSQYEQKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKQPCEAWAGRISYRNTELELQDPGQVEKEIHKAQNVMAGNGRGISHELISLEITSPEVPDLTIIDLPGITRVAVDNQPRDIGLQIKALIK 250          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX2_PIG (Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa GN=MX2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 64/169 (37.87%), Postives = 83/169 (49.11%), Query Frame = 2
Query:  158 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLE---EGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            NL S   +  R C  L D     AL    D +LP IA            LE++ G   LPRGSGI+TR PL L+L K E   +G   Y +       +  D + V +EI+   D   G    IS   I L + SP V +LTLIDLPG+T+VAV  QP  I   I+ ++R
Sbjct:   85 NLYSPFEEKVRPCIDLID--SLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVP-LPRGSGIITRCPLALRLKKKECPWQGRISYRKV----ELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIR 246          
The following BLAST results are available for this feature:
BLAST of CN185299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MX_SOLSE5.491e-1439.26Interferon-induced GTP-binding protein Mx OS=Solea... [more]
MX1_PIG7.172e-1438.69Interferon-induced GTP-binding protein Mx1 OS=Sus ... [more]
MX1_PHOVI7.172e-1434.78Interferon-induced GTP-binding protein Mx1 OS=Phoc... [more]
MX1_CANFA7.172e-1440.88Interferon-induced GTP-binding protein Mx1 OS=Cani... [more]
MX1_OTABY1.223e-1334.24Interferon-induced GTP-binding protein Mx1 OS=Otar... [more]
MX1_MACMU1.223e-1339.18Interferon-induced GTP-binding protein Mx1 OS=Maca... [more]
MX1_EUMJU1.223e-1334.24Interferon-induced GTP-binding protein Mx1 OS=Eume... [more]
MX2_SHEEP1.598e-1340.43Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]
MX2_HUMAN1.598e-1336.26Interferon-induced GTP-binding protein Mx2 OS=Homo... [more]
MX2_PIG2.087e-1337.87Interferon-induced GTP-binding protein Mx2 OS=Sus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185299 ID=CN185299; Name=CN185299; organism=Citrus sinensis; type=EST; length=652bp
TTGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGACCGTCGCCGTTT
CCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCA
TCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGAA
AATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGG
CTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCT
CTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGT
GTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCG
TTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGC
AGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATTT
TGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGTC
GTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCCT
AATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAGC
AGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTTC
GC
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