CN185299

Overview
NameCN185299
Unique NameCN185299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_PONAB (Interferon-induced GTP-binding protein Mx1 OS=Pongo abelii GN=MX1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 66/171 (38.60%), Postives = 84/171 (49.12%), Query Frame = 2
Query:  158 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++        +D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 203          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_HUMAN (Interferon-induced GTP-binding protein Mx1 OS=Homo sapiens GN=MX1 PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 66/171 (38.60%), Postives = 84/171 (49.12%), Query Frame = 2
Query:  158 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++        +D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 203          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_ICTPU (Interferon-induced GTP-binding protein Mx1 OS=Ictalurus punctatus GN=mx1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 62/191 (32.46%), Postives = 93/191 (48.69%), Query Frame = 2
Query:  119 SPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS-------------REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            S  +S    EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PL L++ +  E                +Y E +  P       A V K+I++  D   G    IS   I L + S +V +LTLIDLPG+ +VAV+GQP++I + I+ +++
Sbjct:    2 SASLSEQYEEKVRPCIDLIDSLR----ALGVEKDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRSREEDFWHGKIKYKKDHDEDYEEEIQNP-------ADVEKKIREAQDHMAGVGVGISDELISLEVTSADVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIK 172          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX2_BUBBU (Interferon-induced GTP-binding protein Mx2 OS=Bubalus bubalis GN=MX2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.071e-13
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E        + +I ++   + + V  EI+   +   G  + IS   I+L + SP+V +LTLIDLPG+T+VAVE QP  I   I+ ++
Sbjct:  114 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNITQQ-LQNPSEVEWEIRRAQNIIAGNGRGISHELINLEVTSPDVPDLTLIDLPGITRVAVENQPQDIGLQIKALI 245          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX2_BOVIN (Interferon-induced GTP-binding protein Mx2 OS=Bos taurus GN=MX2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 54/135 (40.00%), Postives = 75/135 (55.56%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E        + +I ++   + + V  EI+   +   G    IS   I+L I SP V +LTLIDLPG+T+VAVE QP  I   I+ +++
Sbjct:  114 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNITQQ-LQNPSEVEWEIRRAQNIIAGNGLGISHELINLEITSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIK 246          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MGM1_YEAST (Dynamin-like GTPase MGM1, mitochondrial OS=Saccharomyces cerevisiae GN=MGM1 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.036e-12
Identity = 50/164 (30.49%), Postives = 81/164 (49.39%), Query Frame = 2
Query:  155 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENM 646
            + +++L  ++    T L     +SA  TL    P+I             LESIVG++FLP+GS +VTRRP+ L L      +   A+F  +      DF  V++ +  E +     ++ +S  PI L+I S  V +L+L+DLPG  +V    QP  +   I ++
Sbjct:  182 DEMLNLTKQMIEIRTILNKVDSSSAHLTL----PSIVVIGSQSSGKSSVLESIVGREFLPKGSNMVTRRPIELTLVNTPNSNNVTADFPSMRLYNIKDFKEVKRMLM-ELNMAVPTSEAVSEEPIQLTIKSSRVPDLSLVDLPGYIQVEAADQPIELKTKIRDL 340          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX1_HORSE (Interferon-induced GTP-binding protein Mx1 OS=Equus caballus GN=MX1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.353e-12
Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  155 ENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L +L +     G   Y +         ++   V ++++   +   G    IS   + L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++R
Sbjct:   39 KNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKRLVKEDEWKGKVSYRDI----EVEISNALDVEEQVRKAQNVLAGEGVGISQELVTLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKTLIR 203          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_ANAPL (Interferon-induced GTP-binding protein Mx OS=Anas platyrhynchos GN=MX PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDF---AAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            SLPAIA            LE++ G   LPRG+GIVTR PL L+L K+        +  +  R   TD    + V   I++  D   G    IS   I L I SP V +LTLIDLPG+ +VA+  QP  I + I+ +++
Sbjct:  130 SLPAIAVIGDQSSGKSSILEALSGVS-LPRGNGIVTRCPLELKLKKIPTSQEWKGKISY--RNISTDLQHASEVENAIRNAQDVVAGTKGNISGELISLEICSPYVPDLTLIDLPGIARVAMRNQPQDIGEQIKKLIK 264          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX2_ICTPU (Interferon-induced GTP-binding protein Mx2 OS=Ictalurus punctatus GN=mx2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.712e-12
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ K  +     G  +Y ++     +   D A V + I+   +   G    IS   I L + S NV +LT+IDLPG+T+VAV+ QP++I    + +++
Sbjct:   31 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKKSRKADFWHGKIKYEDY----EEEIEDPADVEQMIRKAQNEIAGTGMGISDKLISLEVTSSNVPDLTVIDLPGITRVAVKDQPENIGDQSKRLIK 165          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MXE_DANRE (Interferon-induced GTP-binding protein MxE OS=Danio rerio GN=mxe PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.145e-11
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +LPAIA            LE++ G   LPRG+GIVTR PLVL+L K+ +    +    +  + R   D A + K + +      G  + IS   I L I S +V +LTLIDLPG+ +VA   QP+ I + I++++
Sbjct:   42 NLPAIAVIGDQSSGKSSVLEALSGVA-LPRGTGIVTRCPLVLKLKKITKDKSWHGLLTYNDKIRELKDPAKIEKAVLNAQTALAGIGEGISHEMITLEIQSCDVPDLTLIDLPGIARVATGNQPEDIEKQIKSLI 175          
The following BLAST results are available for this feature:
BLAST of CN185299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MX1_PONAB2.087e-1338.60Interferon-induced GTP-binding protein Mx1 OS=Pong... [more]
MX1_HUMAN2.087e-1338.60Interferon-induced GTP-binding protein Mx1 OS=Homo... [more]
MX1_ICTPU4.649e-1332.46Interferon-induced GTP-binding protein Mx1 OS=Icta... [more]
MX2_BUBBU6.071e-1339.55Interferon-induced GTP-binding protein Mx2 OS=Buba... [more]
MX2_BOVIN1.036e-1240.00Interferon-induced GTP-binding protein Mx2 OS=Bos ... [more]
MGM1_YEAST1.036e-1230.49Dynamin-like GTPase MGM1, mitochondrial OS=Sacchar... [more]
MX1_HORSE1.353e-1235.47Interferon-induced GTP-binding protein Mx1 OS=Equu... [more]
MX_ANAPL1.766e-1237.68Interferon-induced GTP-binding protein Mx OS=Anas ... [more]
MX2_ICTPU6.712e-1235.71Interferon-induced GTP-binding protein Mx2 OS=Icta... [more]
MXE_DANRE1.145e-1136.30Interferon-induced GTP-binding protein MxE OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185299 ID=CN185299; Name=CN185299; organism=Citrus sinensis; type=EST; length=652bp
TTGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGACCGTCGCCGTTT
CCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCA
TCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGAA
AATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGG
CTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCT
CTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGT
GTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCG
TTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGC
AGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATTT
TGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGTC
GTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCCT
AATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAGC
AGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTTC
GC
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