CN185299

Overview
NameCN185299
Unique NameCN185299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX2_MACMU (Interferon-induced GTP-binding protein Mx2 OS=Macaca mulatta GN=MX2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.551e-11
Identity = 52/135 (38.52%), Postives = 66/135 (48.89%), Query Frame = 2 
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L K    +               D   V KEI    +   G    IS   I L I SP V +LT+IDLPG+ +VAV  QP  I   I+ +++
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKQPYKAWAGRISYQNTEIELQDPGQVEKEIHKAQNVMAGNGLGISHELISLEITSPEVPDLTIIDLPGIARVAVGNQPRDIGLQIKALIK 250
[Close]
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: MX_CTEID (Interferon-induced GTP-binding protein Mx OS=Ctenopharyngodon idella GN=mx PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.693e-11
Identity = 50/142 (35.21%), Postives = 71/142 (50.00%), Query Frame = 2 
Query:  248 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE--------GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +LPAIA            LE++ G   LPRG+GIVTR PLVL+L K+ +        G   Y +      K+  D A +   +        G  + IS   I L I S +V +LTLIDLPG+ +VA   QP  I + I++++
Sbjct:   42 NLPAIAVIGDQSSGKSSVLEALSGVA-LPRGTGIVTRCPLVLKLKKISKDNNWHQWHGLMSYRD----QTKKLKDPAEIENAVLKAQTVLAGTGEGISHEMITLEIQSSDVPDLTLIDLPGIARVATGNQPKDIEKQIKDLI 178
The following BLAST results are available for this feature:
BLAST of CN185299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MX2_MACMU2.551e-1138.52Interferon-induced GTP-binding protein Mx2 OS=Maca... [more]
MX_CTEID9.693e-1135.21Interferon-induced GTP-binding protein Mx OS=Cteno... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185299 ID=CN185299; Name=CN185299; organism=Citrus sinensis; type=EST; length=652bp
TTGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGACCGTCGCCGTTT
CCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCA
TCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGAA
AATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGG
CTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCT
CTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGT
GTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCG
TTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGC
AGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATTT
TGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGTC
GTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCCT
AATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAGC
AGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTTC
GC
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