EY666540

Overview
NameEY666540
Unique NameEY666540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 478.404 bits (1230), Expect = 2.274e-134
Identity = 231/264 (87.50%), Postives = 242/264 (91.67%), Query Frame = 3
Query:   12 GAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVY 803
            G  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIV LVDTFPG SIDF G LRARVY
Sbjct:   87 GLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVY 350          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 475.707 bits (1223), Expect = 1.474e-133
Identity = 230/264 (87.12%), Postives = 243/264 (92.05%), Query Frame = 3
Query:   12 GAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVY 803
            G VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V LVDTFPG SIDF G LRARVY
Sbjct:   86 GLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVY 349          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 469.159 bits (1206), Expect = 1.380e-131
Identity = 230/264 (87.12%), Postives = 240/264 (90.91%), Query Frame = 3
Query:   12 GAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVY 803
            G VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI  LVDTFPG SIDF G LRARVY
Sbjct:   94 GMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVY 355          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 468.774 bits (1205), Expect = 1.802e-131
Identity = 228/264 (86.36%), Postives = 239/264 (90.53%), Query Frame = 3
Query:   12 GAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVY 803
            G VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV LVD  PG SIDF G LRARVY
Sbjct:   94 GLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVY 357          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 451.055 bits (1159), Expect = 3.888e-126
Identity = 216/266 (81.20%), Postives = 236/266 (88.72%), Query Frame = 3
Query:   12 GAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVYYE 809
            G VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +V LVD FPG SIDF G LRARVY++
Sbjct:   88 GMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHD 353          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 3.196e-112
Identity = 199/263 (75.67%), Postives = 220/263 (83.65%), Query Frame = 3
Query:   18 VDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVY 803
            VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++ NLVDTFPG SIDF G LRARVY
Sbjct:   66 VDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVY 326          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.819e-84
Identity = 152/223 (68.16%), Postives = 179/223 (80.27%), Query Frame = 3
Query:  138 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVY 803
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I  LVDTFP  SIDF   LR+R+Y
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIY 226          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 6.280e-84
Identity = 151/225 (67.11%), Postives = 180/225 (80.00%), Query Frame = 3
Query:  138 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLRARVYYE 809
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+  LVD+FP  SIDF   LR+R+Y E
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDE 228          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.050e-38
Identity = 116/260 (44.62%), Postives = 117/260 (45.00%), Query Frame = 3
Query:   12 GAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVNLVDTFPGPSIDFLGPLR 791
            G VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAG                                         RVPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPG SIDF G LR
Sbjct:   16 GMVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAG-----------------------------------------RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
BLAST of EY666540 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.878e-12
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  285 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT 467
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY666540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_CUCSA2.274e-13487.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.474e-13387.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.380e-13187.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.802e-13186.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.888e-12681.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE3.196e-11275.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP2.819e-8468.16Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC6.280e-8467.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.050e-3844.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX2.878e-1263.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-016-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666540 ID=EY666540; Name=EY666540; organism=Citrus sinensis; type=EST; length=874bp
CCACGCGTCCGGGTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACC
GGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTCT
CCGCACATACAACTTGGACAACACGATGGACGGTCTCTACATTGCCCCTG
CTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGTCCCTG
CCCAACATCAAGGTTCCTCTCATCTTGGGTATATGGGGAGGCAAAGGGCA
AGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAACC
CAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACCC
GCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTATCAAGAA
GGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGGAGCTGGTC
GTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAATGGTTAACGCC
ACACTCATGAACATTGCTGATAACCCAACTTGTGTCCAACTCCCTGGTAT
GTACAACAAGGAGGAGAACCCCCGTGTCCCAATCATAGTCACCGGTAATG
ACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAA
TTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTAT
CTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAACCTTGTCGACA
CCTTCCCCGGGCCATCCATTGATTTCTTGGGACCCCTGAGGGCCAGAGTC
TATTATGAATGAGGTGGAGGAAACGGAATTCCTGTGGGGGGGTGGGAAAC
ATTGGCAAAAACCTGTGGAACTCA
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