CN185280

Overview
NameCN185280
Unique NameCN185280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185280 vs. ExPASy Swiss-Prot
Match: ACS2L_MOUSE (Acetyl-coenzyme A synthetase 2-like, mitochondrial OS=Mus musculus GN=Acss1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 53/173 (30.64%), Postives = 80/173 (46.24%), Query Frame = 1 
Query:   58 GELALSPLIFGASSTLLNANH--YDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 570
            G L +S    G + T+   +    D YF   P          GD   RT GGYY+  GR DD +N+ G ++ + EIE    A    V ETA IG P    G      +V+  + +     +N+L++S  + + K   P      ++ +  LP+T + KVMRR+LRK +    Q
Sbjct:  488 GALCISQAWPGMARTIYGDHQRFVDAYFRAYPGYYFT-----GDGAHRTEGGYYQITGRMDDVINISGHRLGTAEIED-AMADHPAVPETAVIGYPHDIKGEAAFAFIVLKDNISDENMVVNELKLSVATKIAKYAVP----DQILVVKRLPKTRSGKVMRRLLRKIITSRGQ 650
The following BLAST results are available for this feature:
BLAST of CN185280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ACS2L_MOUSE5.424e-1130.64Acetyl-coenzyme A synthetase 2-like, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185280 ID=CN185280; Name=CN185280; organism=Citrus sinensis; type=EST; length=739bp
GAGGTGTTCATTCTTGGGAATGATGGTTGTCCTATTCCTCAAAATGTGCC
GGGGATGGGTGAGTTGGCACTCAGTCCACTTATATTTGGTGCTTCAAGTA
CGCTGCTGAATGCCAACCACTATGATGTCTACTTTAGTGGAATGCCTTCC
CGGAATGGACAGATTCTTAGGAGGCATGGGGATGTCTTTGAGCGCACTTC
TGGAGGGTATTATCGTGCACATGGTCGTGCAGATGATACCATGAACCTTG
GGGGAATCAAGGTTAGTTCAGTTGAGATTGAGCGCATCTGTAATGCGGTT
GATAGCAATGTGCTTGAAACAGCAGCCATTGGTGTGCCACCACCTGATGG
TGGACCTGAGCAACTTACAATAGTTGTTGTATTCAAAGATTCCAATTACA
CGCCACCAGATTTGAATCAACTGAGGATGTCTTTCAATTCAGCAGTACAA
AAGAAACTAAATCCTCTGTTCAAGGTCTCTCATGTTGTTCCCCTTCCATC
CCTTCCAAGAACAGCAACAAATAAGGTTATGAGAAGGGTCTTGCGGAAGC
AATTAGCTCAACTTGATCAAAATTCTAAACTATGATCTAAACTTGTGAAT
TTGTCATAGCCGCCAAAGTACAGCCTGTATTCAAACATTGTCTTTGCACT
GAAAGAATAATTTTATCCCCCATACTGTAAGTTATATAGCAACAAGTGGT
TTCTTGAGAAATGTCCTGTGATTAAAATAAAAATGTTCA
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