CN185254

Overview
NameCN185254
Unique NameCN185254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  394 GVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSW 675
            G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  ++ Y     E+   SW
Sbjct:   51 GTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.510e-17
Identity = 45/103 (43.69%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  376 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS-DKAKYESTARSWTQKYAM 678
            GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ +S D   + S A+ +T+  AM
Sbjct:   51 GGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAM 153          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   ++  D+ +YE   R+  +K++
Sbjct:   55 GGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAKKFS 156          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 45/108 (41.67%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  358 AGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLG 681
            AGG+F + +    D+P  PPK  F TK+FHPN+++NG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y S AR  T  +A G  L G
Sbjct:   56 AGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTDIHAQGTSLRG 163          
The following BLAST results are available for this feature:
BLAST of CN185254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC9_XENLA1.156e-1741.18SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.156e-1741.18SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.156e-1741.18SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.156e-1741.18SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.156e-1741.18SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.156e-1741.18SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC2_CANAL1.156e-1741.41Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC21_ARATH1.510e-1743.69Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC9_PAGMA1.972e-1740.20SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UB2SB_XENLA1.972e-1741.67Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185254 ID=CN185254; Name=CN185254; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTCCCTTTTACATGATTCGCCTATTTTATCACAAGTTTTCTATTA
TGGAAGAAATTTCCAAGGAAGGAAGCGAAGGCGTTTGTTTCTTCATGATT
ATTGCATGAACACAGACGCGCGCGATGTAAGAATGTTTGGTGCAAAATAG
TAAACAAGTACTTAAGACCATTAACTACCTTCCATCGAACAAGCTTCAAA
CACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCAACTCCTCC
CAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCAAGTTAAAG
AAAATAGATAGACAACACACACAACATATTTCAATAAATGCTCCTTTTTC
TGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTGTCCAGCTC
CTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATGTGGGCAAT
CTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAAGGAGCAGA
TAGAGAGCAGGACCTTTGAAATGGTAAGCGCTGGACTCCACTGTTCTTTA
AGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAAGAC
CTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAGGAA
AATGAATGGTAACTAAAAATACACCTCCTGCAT
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