CN185254

Overview
NameCN185254
Unique NameCN185254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 33/111 (29.73%), Postives = 57/111 (51.35%), Query Frame = -3
Query:  385 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 678
            GG F   + FP +YP  PP V F + ++HPN+  +G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++       +K
Sbjct:   51 GGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRK 161          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   78 GGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 184          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/100 (34.00%), Postives = 54/100 (54.00%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG F   +    D+P  PPK  F TK+FHPN++  G IC++ LK+ W+  L +  +LL+I  LL  PN +  L  + + +   +   Y   A+ +T  +A
Sbjct:   55 GGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKLFTSIHA 154          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 40/107 (37.38%), Postives = 53/107 (49.53%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   78 GGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   78 GGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 32/110 (29.09%), Postives = 59/110 (53.64%), Query Frame = -3
Query:  385 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL------------DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 678
            GG F   + FP +YP  PP V F ++++HPN+  +G +C+            ++  E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++   R   +K
Sbjct:   54 GGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISIHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRK 163          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 40/107 (37.38%), Postives = 53/107 (49.53%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   78 GGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  + A  +  DK  + +  + + + YA
Sbjct:   78 GGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 32/103 (31.07%), Postives = 53/103 (51.46%), Query Frame = -3
Query:  415 AGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL--------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY 681
            AG +    + FP  YP +PP + F +K+FHPNI  +G +C+ IL              K++W+P   I  +++SI  +L  PN   P   + + MY+ +  +Y
Sbjct:   81 AGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEY 183          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 40/107 (37.38%), Postives = 53/107 (49.53%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG F   I  P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  DK  +      + ++YA
Sbjct:   78 GGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
The following BLAST results are available for this feature:
BLAST of CN185254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBC13_ARATH4.255e-1229.73Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBE2F_HUMAN9.479e-1237.38NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UBE2S_DICDI1.238e-1134.00Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBE2F_RAT1.238e-1137.38NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBE2F_BOVIN1.238e-1136.45NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UBC7_WHEAT1.238e-1129.09Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UB2FA_MOUSE1.238e-1137.38NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_DANRE2.112e-1136.45NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
Y1A1_ENCCU3.602e-1131.07Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UB2FB_MOUSE3.602e-1137.38NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185254 ID=CN185254; Name=CN185254; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTCCCTTTTACATGATTCGCCTATTTTATCACAAGTTTTCTATTA
TGGAAGAAATTTCCAAGGAAGGAAGCGAAGGCGTTTGTTTCTTCATGATT
ATTGCATGAACACAGACGCGCGCGATGTAAGAATGTTTGGTGCAAAATAG
TAAACAAGTACTTAAGACCATTAACTACCTTCCATCGAACAAGCTTCAAA
CACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCAACTCCTCC
CAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCAAGTTAAAG
AAAATAGATAGACAACACACACAACATATTTCAATAAATGCTCCTTTTTC
TGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTGTCCAGCTC
CTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATGTGGGCAAT
CTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAAGGAGCAGA
TAGAGAGCAGGACCTTTGAAATGGTAAGCGCTGGACTCCACTGTTCTTTA
AGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAAGAC
CTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAGGAA
AATGAATGGTAACTAAAAATACACCTCCTGCAT
back to top