CN185254

Overview
NameCN185254
Unique NameCN185254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 45/120 (37.50%), Postives = 59/120 (49.17%), Query Frame = -3 
Query:  349 GGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYCR 678
            GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   L G C+
Sbjct:  104 GGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAVCEMLEGKCQ 221
[Close]
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 45/120 (37.50%), Postives = 59/120 (49.17%), Query Frame = -3 
Query:  349 GGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYCR 678
            GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   L G C+
Sbjct:  104 GGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAVCEMLEGKCQ 221
[Close]
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 45/119 (37.82%), Postives = 58/119 (48.74%), Query Frame = -3 
Query:  352 GGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYC 678
            GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   + G C
Sbjct:  147 GGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAVCDMMEGKC 263
[Close]
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 45/119 (37.82%), Postives = 58/119 (48.74%), Query Frame = -3 
Query:  352 GGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYC 678
            GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   + G C
Sbjct:  147 GGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAVCDMMEGKC 263
[Close]
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 45/119 (37.82%), Postives = 58/119 (48.74%), Query Frame = -3 
Query:  352 GGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYC 678
            GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   + G C
Sbjct:  145 GGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAVCDMMEGKC 261
The following BLAST results are available for this feature:
BLAST of CN185254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UBE2Z_XENTR6.144e-1137.50Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_XENLA6.144e-1137.50Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_RAT8.024e-1137.82Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE8.024e-1137.82Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN8.024e-1137.82Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185254 ID=CN185254; Name=CN185254; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTCCCTTTTACATGATTCGCCTATTTTATCACAAGTTTTCTATTA
TGGAAGAAATTTCCAAGGAAGGAAGCGAAGGCGTTTGTTTCTTCATGATT
ATTGCATGAACACAGACGCGCGCGATGTAAGAATGTTTGGTGCAAAATAG
TAAACAAGTACTTAAGACCATTAACTACCTTCCATCGAACAAGCTTCAAA
CACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCAACTCCTCC
CAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCAAGTTAAAG
AAAATAGATAGACAACACACACAACATATTTCAATAAATGCTCCTTTTTC
TGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTGTCCAGCTC
CTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATGTGGGCAAT
CTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAAGGAGCAGA
TAGAGAGCAGGACCTTTGAAATGGTAAGCGCTGGACTCCACTGTTCTTTA
AGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAAGAC
CTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAGGAA
AATGAATGGTAACTAAAAATACACCTCCTGCAT
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