CN185254

Overview
NameCN185254
Unique NameCN185254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:  107 GGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:  107 GGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y +++A+++  AR WT++YA
Sbjct:  107 GGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 56/100 (56.00%), Postives = 79/100 (79.00%), Query Frame = -3
Query:  379 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 678
            GG+F ++I FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K+++ +++  AR +T ++A
Sbjct:   53 GGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = -3
Query:  376 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 678
            GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   49 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  376 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 678
            GGVF + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL  ++A ++K ++A+    AR WTQKYA+
Sbjct:   49 GGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAV 149          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  376 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 678
            GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KS++A+   TAR+WT+ YAM
Sbjct:   49 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYAM 149          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.987e-27
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  376 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 678
            GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   49 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.987e-27
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  376 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 678
            GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   49 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CN185254 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.987e-27
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  376 GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 678
            GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K+++A+   TAR+WT+ YAM
Sbjct:   49 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
The following BLAST results are available for this feature:
BLAST of CN185254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
UB2E3_MOUSE8.810e-3467.00Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN8.810e-3467.00Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN8.810e-3467.00Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC31_ARATH2.031e-3056.00Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBE2N_MACFA2.745e-2753.47Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_DROME2.745e-2754.46Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBE2N_RAT3.585e-2754.46Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_PONAB7.987e-2753.47Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE7.987e-2753.47Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN7.987e-2753.47Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185254 ID=CN185254; Name=CN185254; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTCCCTTTTACATGATTCGCCTATTTTATCACAAGTTTTCTATTA
TGGAAGAAATTTCCAAGGAAGGAAGCGAAGGCGTTTGTTTCTTCATGATT
ATTGCATGAACACAGACGCGCGCGATGTAAGAATGTTTGGTGCAAAATAG
TAAACAAGTACTTAAGACCATTAACTACCTTCCATCGAACAAGCTTCAAA
CACAAACATTCAACATTAACATAAAAACGTCCCGCCCTTGCAACTCCTCC
CAACACCATTCTAAAACACCAACGTCTGCCCTCCCCAAAGCAAGTTAAAG
AAAATAGATAGACAACACACACAACATATTTCAATAAATGCTCCTTTTTC
TGCAATATCCTAACAACCTTCATCCCATGGCATACTTCTGTGTCCAGCTC
CTGGCCGTGGATTCATATTTGGCCTTGTCGGACTTGTACATGTGGGCAAT
CTCCGGTACAAGAGGGTCGTCGGGATTTGGATCAGTAAGCAAGGAGCAGA
TAGAGAGCAGGACCTTTGAAATGGTAAGCGCTGGACTCCACTGTTCTTTA
AGGATATCAAGACAGATGCTTCCATTGCTGTTGATGTTCGGGTGGAAGAC
CTTGGTCCTAAAAGCAACCTTTGGGGGCTTGAAAGGATAATCAGGAGGAA
AATGAATGGTAACTAAAAATACACCTCCTGCAT
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